Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10230311	1.00[EUR][1000 genomes]
rs17150099	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150109	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28453224	1.00[EUR][1000 genomes]
rs28612482	1.00[EUR][1000 genomes]
rs56742825	1.00[EUR][1000 genomes]
rs57207375	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57903513	1.00[EUR][1000 genomes]
rs61757776	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61757847	1.00[EUR][1000 genomes]
rs61758830	1.00[EUR][1000 genomes]
rs6964279	1.00[EUR][1000 genomes]
rs73720726	1.00[EUR][1000 genomes]
rs73720730	1.00[EUR][1000 genomes]
rs73720731	1.00[EUR][1000 genomes]
rs73720733	1.00[EUR][1000 genomes]
rs73720734	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73720737	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73720739	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73720740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73720741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73720742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73720746	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73722649	1.00[EUR][1000 genomes]
rs73722651	1.00[EUR][1000 genomes]
rs7793138	1.00[EUR][1000 genomes]
rs7799820	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032108	chr7:126278349-126362592	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126321800-126328800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr7:126323600-126328600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:126324400-126325200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:126324800-126326800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:126325000-126326600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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