Variant report

Variant	rs73720748
Chromosome Location	chr7:126368547-126368548
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1592373	1.00[AMR][1000 genomes]
rs61305890	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6944324	1.00[AMR][1000 genomes]
rs6948359	1.00[AMR][1000 genomes]
rs6958101	1.00[AMR][1000 genomes]
rs6974461	1.00[AMR][1000 genomes]
rs73720728	1.00[AMR][1000 genomes]
rs73722650	1.00[AMR][1000 genomes]
rs73722655	1.00[AMR][1000 genomes]
rs7777238	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126367400-126369400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:126367600-126368600	Enhancers	NH-A	brain
3	chr7:126367600-126368800	Enhancers	NHEK	skin
4	chr7:126367600-126369000	Enhancers	HMEC	breast
5	chr7:126367800-126368600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:126367800-126368800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:126367800-126369000	Enhancers	HUVEC	blood vessel
8	chr7:126368000-126368600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr7:126368000-126369000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:126368000-126369000	Weak transcription	Pancreas	Pancrea
11	chr7:126368200-126368600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:126368200-126368600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr7:126368200-126368600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:126368200-126368600	Enhancers	Brain Substantia Nigra	brain
15	chr7:126368200-126368600	Enhancers	Dnd41	blood
16	chr7:126368200-126368600	Flanking Active TSS	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links