Variant report

Variant	rs73725830
Chromosome Location	chr6:13446237-13446238
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13327291..13329947-chr6:13444548..13447508,3	K562	blood:
2	chr6:13445317..13447103-chr6:13485920..13488913,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187461	Chromatin interaction
ENSG00000145990	Chromatin interaction
ENSG00000145979	Chromatin interaction
ENSG00000237786	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2115062	1.00[EUR][1000 genomes]
rs2195307	1.00[EUR][1000 genomes]
rs34295856	1.00[EUR][1000 genomes]
rs559205	1.00[EUR][1000 genomes]
rs73725828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73725829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7763818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7766813	1.00[EUR][1000 genomes]
rs9474154	1.00[EUR][1000 genomes]
rs9474175	1.00[EUR][1000 genomes]
rs9474177	1.00[EUR][1000 genomes]
rs9474197	1.00[EUR][1000 genomes]
rs9474308	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1028533	chr6:13239059-13484814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv538136	chr6:13239059-13484814	Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv462640	chr6:13426539-13519434	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv600994	chr6:13426539-13519434	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv470802	chr6:13441424-13519371	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13428800-13451200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:13433000-13454000	Weak transcription	Hela-S3	cervix
3	chr6:13434400-13448000	Weak transcription	Esophagus	oesophagus
4	chr6:13438200-13448400	Weak transcription	Small Intestine	intestine
5	chr6:13438600-13462200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:13441400-13448800	Weak transcription	Stomach Mucosa	stomach
7	chr6:13441600-13451600	Weak transcription	Gastric	stomach
8	chr6:13441600-13454400	Weak transcription	Placenta	Placenta
9	chr6:13442800-13448000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr6:13444200-13450400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:13444600-13447000	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr6:13444800-13446800	Enhancers	Fetal Lung	lung
13	chr6:13445000-13446400	Enhancers	HUVEC	blood vessel
14	chr6:13445000-13447000	Enhancers	Duodenum Mucosa	Duodenum
15	chr6:13445200-13446400	Enhancers	Fetal Muscle Leg	muscle
16	chr6:13445200-13446600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:13445200-13446600	Enhancers	GM12878-XiMat	blood
18	chr6:13445200-13447000	Enhancers	Adipose Nuclei	Adipose
19	chr6:13445200-13447000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
20	chr6:13445200-13447200	Enhancers	Fetal Brain Male	brain
21	chr6:13445200-13447200	Enhancers	Fetal Stomach	stomach
22	chr6:13445200-13447400	Enhancers	Brain Anterior Caudate	brain
23	chr6:13445200-13447400	Enhancers	Fetal Heart	heart
24	chr6:13445200-13447600	Enhancers	Brain Angular Gyrus	brain
25	chr6:13445200-13447800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr6:13445200-13449000	Enhancers	Right Ventricle	heart
27	chr6:13445200-13450800	Enhancers	Left Ventricle	heart
28	chr6:13445200-13457800	Enhancers	Right Atrium	heart
29	chr6:13445400-13446400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:13445400-13446600	Weak transcription	Colonic Mucosa	Colon
31	chr6:13445400-13446800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:13445400-13447000	Enhancers	NHLF	lung
33	chr6:13445400-13447600	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr6:13445400-13449400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:13445400-13449600	Enhancers	Psoas Muscle	Psoas
36	chr6:13445400-13453400	Weak transcription	NH-A	brain
37	chr6:13445400-13454000	Weak transcription	Primary T cells from cord blood	blood
38	chr6:13445400-13454000	Weak transcription	Pancreas	Pancrea
39	chr6:13445600-13446400	Weak transcription	Liver	Liver
40	chr6:13445600-13447000	Enhancers	Spleen	Spleen
41	chr6:13445600-13448000	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr6:13445600-13448000	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr6:13445600-13448200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr6:13445600-13448200	Weak transcription	Thymus	Thymus
45	chr6:13445600-13448400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr6:13445600-13448600	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr6:13445600-13448600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr6:13445600-13449000	Enhancers	Brain Substantia Nigra	brain
49	chr6:13445600-13449400	Enhancers	Brain Cingulate Gyrus	brain
50	chr6:13445600-13450200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links