Variant report

Variant	rs73729085
Chromosome Location	chr7:137561861-137561862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:137552799..137554364-chr7:137560762..137563615,2	K562	blood:
2	chr7:137556014..137557927-chr7:137560884..137562651,2	MCF-7	breast:
3	chr7:137561745..137565223-chr7:137565375..137570123,4	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10223970	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10229562	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10229720	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10241560	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10267096	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10275839	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28421417	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3735018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3800632	1.00[EUR][1000 genomes]
rs55868765	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55960820	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57402658	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57979055	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61280276	1.00[EUR][1000 genomes]
rs6972144	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73460673	1.00[EUR][1000 genomes]
rs73729083	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73729087	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73729089	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831150	chr7:137500559-137652808	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137533800-137575400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:137534200-137563000	Weak transcription	HMEC	breast
3	chr7:137535200-137562600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr7:137543400-137566800	Strong transcription	Placenta	Placenta
5	chr7:137545000-137564200	Weak transcription	Small Intestine	intestine
6	chr7:137546400-137562600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:137546400-137564000	Weak transcription	Brain Angular Gyrus	brain
8	chr7:137547200-137562200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:137547800-137567200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr7:137548000-137562000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr7:137548400-137563200	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr7:137550200-137564400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr7:137550600-137563400	Weak transcription	Brain Substantia Nigra	brain
14	chr7:137550800-137562600	Weak transcription	Brain Anterior Caudate	brain
15	chr7:137551200-137569400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr7:137551400-137562600	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr7:137551600-137562800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr7:137553000-137562600	Weak transcription	Primary T cells from cord blood	blood
19	chr7:137553000-137563200	Weak transcription	Colonic Mucosa	Colon
20	chr7:137555600-137563800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr7:137555600-137583200	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr7:137556000-137562000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:137556000-137563200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:137556000-137566800	Strong transcription	GM12878-XiMat	blood
25	chr7:137556000-137570800	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr7:137556000-137573600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr7:137556400-137562800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr7:137556400-137564800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr7:137556600-137562800	Weak transcription	Gastric	stomach
30	chr7:137556600-137563200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr7:137557000-137566800	Strong transcription	Fetal Intestine Large	intestine
32	chr7:137557000-137570600	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr7:137557200-137564000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr7:137557200-137566800	Strong transcription	Duodenum Mucosa	Duodenum
35	chr7:137557400-137567200	Genic enhancers	Osteobl	bone
36	chr7:137557600-137563200	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr7:137557600-137563400	Strong transcription	Primary hematopoietic stem cells	blood
38	chr7:137557800-137564400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr7:137557800-137564600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr7:137557800-137566400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr7:137557800-137583800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr7:137558000-137562800	Weak transcription	Esophagus	oesophagus
43	chr7:137558000-137564800	Enhancers	Fetal Heart	heart
44	chr7:137558200-137565400	Genic enhancers	Fetal Muscle Leg	muscle
45	chr7:137558200-137566800	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr7:137558200-137566800	Strong transcription	Liver	Liver
47	chr7:137558400-137562400	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr7:137558400-137566800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr7:137558400-137571600	Strong transcription	Primary B cells from peripheral blood	blood
50	chr7:137558400-137579200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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