Variant report

Variant	rs73729542
Chromosome Location	chr7:137689557-137689558
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137583170..137588345-chr7:137688405..137691754,4	K562	blood:
2	chr7:137685701..137688998-chr7:137689379..137693014,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AKR1D1-3	chr7:137689302-137689577	NONHSAT123591
2	lnc-AKR1D1-3	chr7:137689302-137689655	NONHSAT123590

Variant related genes	Relation type
ENSG00000122787	Chromatin interaction
ENSG00000182158	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10235324	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10271444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275371	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11971315	0.96[EUR][1000 genomes]
rs17169503	0.96[EUR][1000 genomes]
rs57516363	0.98[EUR][1000 genomes]
rs58616293	0.98[EUR][1000 genomes]
rs6955277	0.90[EUR][1000 genomes]
rs7780522	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137686800-137693400	Weak transcription	Aorta	Aorta
2	chr7:137686800-137693400	Weak transcription	Fetal Heart	heart
3	chr7:137687000-137690800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:137687000-137693400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:137687000-137693400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:137687000-137693400	Weak transcription	Right Atrium	heart
7	chr7:137687000-137700000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:137687600-137690800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:137687600-137690800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:137687600-137692800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr7:137687600-137693400	Weak transcription	Brain Substantia Nigra	brain
12	chr7:137687600-137693400	Weak transcription	Fetal Muscle Leg	muscle
13	chr7:137687600-137693800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:137687800-137689600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:137687800-137690600	Weak transcription	Osteobl	bone
16	chr7:137687800-137690800	Weak transcription	NHLF	lung
17	chr7:137687800-137693400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr7:137687800-137693400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr7:137687800-137693400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:137687800-137693400	Weak transcription	Adipose Nuclei	Adipose
21	chr7:137687800-137693400	Weak transcription	Liver	Liver
22	chr7:137687800-137693400	Weak transcription	Brain Anterior Caudate	brain
23	chr7:137687800-137693400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr7:137687800-137693400	Weak transcription	A549	lung
25	chr7:137687800-137693400	Weak transcription	Hela-S3	cervix
26	chr7:137687800-137693600	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr7:137687800-137694000	Weak transcription	HMEC	breast
28	chr7:137688000-137690400	Weak transcription	Placenta	Placenta
29	chr7:137688000-137692800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr7:137688000-137693200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr7:137688000-137693400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr7:137688000-137693400	Weak transcription	GM12878-XiMat	blood
33	chr7:137688000-137693400	Weak transcription	K562	blood
34	chr7:137688000-137699600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr7:137688000-137703800	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr7:137688400-137689800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr7:137688400-137690000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr7:137688800-137693400	Weak transcription	Fetal Intestine Large	intestine
39	chr7:137688800-137693400	Weak transcription	HepG2	liver
40	chr7:137689000-137691000	Enhancers	NHDF-Ad	bronchial
41	chr7:137689200-137689600	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr7:137689400-137690000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr7:137689400-137693000	Weak transcription	Spleen	Spleen

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