Variant report

Variant	rs73747936
Chromosome Location	chr6:80712899-80712900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80656144..80658220-chr6:80712686..80714230,2	K562	blood:

Variant related genes	Relation type
ENSG00000118402	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10485141	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10485142	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs151655	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16891457	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17254348	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1927429	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2273753	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2295839	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3799493	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3799494	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3799495	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41463544	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs45437302	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45452496	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706825	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56970160	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57260355	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58056450	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58183467	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58898479	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59586645	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59990086	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60216617	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60336899	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73477925	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73747925	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73747932	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73747959	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73747961	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73747963	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73747975	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73748000	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80703800-80713200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:80712200-80713200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:80712600-80713200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:80712600-80713200	Enhancers	Primary T cells fromperipheralblood	blood
5	chr6:80712600-80713200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:80712600-80713200	Enhancers	Fetal Thymus	thymus
7	chr6:80712600-80713400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:80712600-80713400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:80712600-80713600	Enhancers	Esophagus	oesophagus
10	chr6:80712600-80713600	Enhancers	Small Intestine	intestine
11	chr6:80712600-80714000	Flanking Active TSS	Dnd41	blood
12	chr6:80712600-80714600	Active TSS	Rectal Smooth Muscle	rectum
13	chr6:80712800-80713000	Enhancers	Adipose Nuclei	Adipose
14	chr6:80712800-80713000	Active TSS	Thymus	Thymus
15	chr6:80712800-80713000	Enhancers	HepG2	liver
16	chr6:80712800-80713200	Enhancers	Primary T killer memory cells from peripheral blood	blood

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