Variant report

Variant	rs73748708
Chromosome Location	chr6:80914900-80914901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs57634027	0.81[AFR][1000 genomes]
rs59818432	1.00[AFR][1000 genomes]
rs73748703	0.86[AFR][1000 genomes]
rs73748750	0.92[AFR][1000 genomes]
rs73750062	0.81[AFR][1000 genomes]
rs73750063	0.81[AFR][1000 genomes]
rs73750071	0.81[AFR][1000 genomes]
rs73750073	0.81[AFR][1000 genomes]
rs73750076	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv886309	chr6:80880138-80959885	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1033452	chr6:80888667-81000213	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80878000-80921000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:80878600-80916000	Weak transcription	Adipose Nuclei	Adipose
3	chr6:80882400-80935400	Weak transcription	Dnd41	blood
4	chr6:80885800-80919000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:80891600-80931200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:80896200-80921000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:80896400-80927400	Weak transcription	Aorta	Aorta
8	chr6:80896400-80943800	Weak transcription	Right Ventricle	heart
9	chr6:80897800-80918800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:80904200-80921800	Weak transcription	Fetal Thymus	thymus
11	chr6:80904400-80916200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:80905000-80919000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr6:80905600-80923800	Weak transcription	Small Intestine	intestine
14	chr6:80907400-80919800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:80907400-80920400	Weak transcription	Gastric	stomach
16	chr6:80907600-80915000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:80907600-80916800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:80907600-80917000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr6:80907600-80920400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:80907600-80920400	Weak transcription	NHDF-Ad	bronchial
21	chr6:80907800-80915800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr6:80907800-80919800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:80907800-80920400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr6:80907800-80920600	Weak transcription	HSMM	muscle
25	chr6:80907800-80920800	Weak transcription	Pancreas	Pancrea
26	chr6:80907800-80921000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr6:80908000-80920400	Weak transcription	Fetal Muscle Leg	muscle
28	chr6:80908000-80920400	Weak transcription	HSMMtube	muscle
29	chr6:80908000-80936200	Weak transcription	Fetal Lung	lung
30	chr6:80909000-80920400	Weak transcription	Left Ventricle	heart
31	chr6:80909000-80920400	Weak transcription	Psoas Muscle	Psoas
32	chr6:80909000-80940200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr6:80909400-80915200	Weak transcription	Osteobl	bone
34	chr6:80910000-80933400	Weak transcription	Esophagus	oesophagus
35	chr6:80911200-80924200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr6:80911400-80919400	Weak transcription	GM12878-XiMat	blood
37	chr6:80911400-80920000	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:80911800-80935200	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr6:80912000-80921000	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr6:80912600-80915400	Strong transcription	Primary T cells from cord blood	blood
41	chr6:80912600-80915400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:80912800-80915800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:80913400-80919400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr6:80913400-80923200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:80913600-80919800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr6:80913800-80920600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:80914000-80920000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:80914000-80920400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:80914200-80915200	Strong transcription	Primary B cells from cord blood	blood
50	chr6:80914200-80916400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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