Variant report

Variant	rs73748753
Chromosome Location	chr6:80934731-80934732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs56220877	0.85[AFR][1000 genomes]
rs56263407	0.98[AFR][1000 genomes]
rs57634027	0.87[AFR][1000 genomes]
rs57984283	1.00[AFR][1000 genomes]
rs61537572	0.93[AFR][1000 genomes]
rs73748703	0.91[AFR][1000 genomes]
rs73748711	0.96[AFR][1000 genomes]
rs73748747	1.00[AFR][1000 genomes]
rs73748749	1.00[AFR][1000 genomes]
rs73748751	1.00[AFR][1000 genomes]
rs73748754	0.98[AFR][1000 genomes]
rs73748755	0.98[AFR][1000 genomes]
rs73748756	0.93[AFR][1000 genomes]
rs73748759	0.93[AFR][1000 genomes]
rs73748761	0.93[AFR][1000 genomes]
rs73748762	0.93[AFR][1000 genomes]
rs73748763	0.85[AFR][1000 genomes]
rs73750062	0.87[AFR][1000 genomes]
rs73750063	0.87[AFR][1000 genomes]
rs73750065	0.82[AFR][1000 genomes]
rs73750071	0.87[AFR][1000 genomes]
rs73750072	0.96[AFR][1000 genomes]
rs73750073	0.87[AFR][1000 genomes]
rs73750074	0.93[AFR][1000 genomes]
rs73750076	0.87[AFR][1000 genomes]
rs73750077	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv886309	chr6:80880138-80959885	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1033452	chr6:80888667-81000213	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80882400-80935400	Weak transcription	Dnd41	blood
2	chr6:80896400-80943800	Weak transcription	Right Ventricle	heart
3	chr6:80908000-80936200	Weak transcription	Fetal Lung	lung
4	chr6:80909000-80940200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:80911800-80935200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:80914600-80980400	Weak transcription	Ovary	ovary
7	chr6:80914800-80938400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:80914800-80938600	Weak transcription	Liver	Liver
9	chr6:80915400-80938200	Weak transcription	Primary T cells from cord blood	blood
10	chr6:80915400-80942000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:80915800-80956000	Weak transcription	Brain Substantia Nigra	brain
12	chr6:80920800-80943600	Weak transcription	Psoas Muscle	Psoas
13	chr6:80920800-80953800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:80921200-80940200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:80921200-80940200	Weak transcription	HSMMtube	muscle
16	chr6:80921400-80973200	Weak transcription	Primary B cells from cord blood	blood
17	chr6:80921600-80938400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:80922200-80964200	Weak transcription	Fetal Intestine Small	intestine
19	chr6:80924000-80938400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:80924000-80942800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:80924000-80968400	Weak transcription	Gastric	stomach
22	chr6:80924000-80976000	Weak transcription	HSMM	muscle
23	chr6:80924200-80938600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:80927800-80959800	Weak transcription	Aorta	Aorta
25	chr6:80928000-80936000	Weak transcription	Fetal Stomach	stomach
26	chr6:80929400-80938000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:80929400-80969200	Weak transcription	Left Ventricle	heart
28	chr6:80931800-80938000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:80932800-80956200	Weak transcription	Lung	lung
30	chr6:80933600-80943800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr6:80934000-80937000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:80934400-80935000	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr6:80934400-80935000	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr6:80934400-80935600	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr6:80934400-80937200	Weak transcription	NHDF-Ad	bronchial
36	chr6:80934600-80935000	Enhancers	H9 Cell Line	embryonic stem cell
37	chr6:80934600-80935000	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr6:80934600-80935600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:80934600-80937200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links