Variant report

Variant	rs73748762
Chromosome Location	chr6:80964783-80964784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs56220877	0.91[AFR][1000 genomes]
rs56263407	0.95[AFR][1000 genomes]
rs57984283	0.93[AFR][1000 genomes]
rs61537572	1.00[AFR][1000 genomes]
rs73748703	0.84[AFR][1000 genomes]
rs73748711	0.89[AFR][1000 genomes]
rs73748747	0.93[AFR][1000 genomes]
rs73748749	0.93[AFR][1000 genomes]
rs73748751	0.93[AFR][1000 genomes]
rs73748753	0.93[AFR][1000 genomes]
rs73748754	0.95[AFR][1000 genomes]
rs73748755	0.95[AFR][1000 genomes]
rs73748756	1.00[AFR][1000 genomes]
rs73748759	1.00[AFR][1000 genomes]
rs73748761	1.00[AFR][1000 genomes]
rs73748763	0.91[AFR][1000 genomes]
rs73750072	0.89[AFR][1000 genomes]
rs73750074	0.87[AFR][1000 genomes]
rs73750077	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1033452	chr6:80888667-81000213	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80914600-80980400	Weak transcription	Ovary	ovary
2	chr6:80921400-80973200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:80924000-80968400	Weak transcription	Gastric	stomach
4	chr6:80924000-80976000	Weak transcription	HSMM	muscle
5	chr6:80929400-80969200	Weak transcription	Left Ventricle	heart
6	chr6:80939000-80974800	Weak transcription	Primary T cells from cord blood	blood
7	chr6:80944000-80982800	Weak transcription	Pancreas	Pancrea
8	chr6:80944600-80977200	Weak transcription	Fetal Stomach	stomach
9	chr6:80956600-80971000	Weak transcription	Lung	lung
10	chr6:80957600-80975200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:80958800-80968600	Weak transcription	Fetal Heart	heart
12	chr6:80960400-80968000	Weak transcription	Psoas Muscle	Psoas
13	chr6:80960400-80971000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:80960600-80997400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:80960800-80970000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:80962000-80966800	Weak transcription	Fetal Lung	lung
17	chr6:80963000-80972600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:80963800-80966000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:80964000-80965000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:80964000-80965800	Enhancers	HepG2	liver
21	chr6:80964000-80967400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr6:80964200-80964800	Enhancers	Liver	Liver
23	chr6:80964200-80964800	Enhancers	Brain Angular Gyrus	brain
24	chr6:80964200-80964800	Enhancers	Fetal Intestine Small	intestine
25	chr6:80964200-80964800	Enhancers	K562	blood
26	chr6:80964400-80964800	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr6:80964400-80965000	Enhancers	Brain Hippocampus Middle	brain
28	chr6:80964600-80965000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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