Variant report

Variant	rs73752328
Chromosome Location	chr5:15854394-15854395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs55704539	1.00[AMR][1000 genomes]
rs55762424	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55792048	1.00[AMR][1000 genomes]
rs55842606	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55900820	1.00[AMR][1000 genomes]
rs56804352	1.00[AMR][1000 genomes]
rs57456523	1.00[AMR][1000 genomes]
rs57789337	1.00[AMR][1000 genomes]
rs58172920	1.00[AMR][1000 genomes]
rs58451844	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58700467	1.00[AMR][1000 genomes]
rs60563254	0.83[AFR][1000 genomes]
rs60716264	0.83[AFR][1000 genomes]
rs60782876	0.83[AFR][1000 genomes]
rs60910436	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60964517	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61489070	1.00[AMR][1000 genomes]
rs6861989	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6888839	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6897069	0.83[AFR][1000 genomes]
rs73752326	0.81[AFR][1000 genomes]
rs73752327	0.91[AFR][1000 genomes]
rs73752329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752342	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752345	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752347	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752348	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752349	1.00[AMR][1000 genomes]
rs73752350	1.00[AMR][1000 genomes]
rs73752351	1.00[AMR][1000 genomes]
rs73752352	1.00[AMR][1000 genomes]
rs73752353	1.00[AMR][1000 genomes]
rs73752354	1.00[AMR][1000 genomes]
rs73752355	1.00[AMR][1000 genomes]
rs73752356	1.00[AMR][1000 genomes]
rs73752357	1.00[AMR][1000 genomes]
rs73752358	1.00[AMR][1000 genomes]
rs73752359	1.00[AMR][1000 genomes]
rs73752360	1.00[AMR][1000 genomes]
rs73752361	1.00[AMR][1000 genomes]
rs73752362	1.00[AMR][1000 genomes]
rs73752365	1.00[AMR][1000 genomes]
rs73752368	1.00[AMR][1000 genomes]
rs73752369	1.00[AMR][1000 genomes]
rs73752370	1.00[AMR][1000 genomes]
rs73752371	1.00[AMR][1000 genomes]
rs73752372	1.00[AMR][1000 genomes]
rs73752373	1.00[AMR][1000 genomes]
rs73752374	1.00[AMR][1000 genomes]
rs73752375	1.00[AMR][1000 genomes]
rs73752378	1.00[AMR][1000 genomes]
rs73752379	1.00[AMR][1000 genomes]
rs73752380	1.00[AMR][1000 genomes]
rs73752381	1.00[AMR][1000 genomes]
rs73752382	1.00[AMR][1000 genomes]
rs73752383	1.00[AMR][1000 genomes]
rs73752384	1.00[AMR][1000 genomes]
rs73752385	1.00[AMR][1000 genomes]
rs73752390	1.00[AMR][1000 genomes]
rs73752397	1.00[AMR][1000 genomes]
rs73752399	1.00[AMR][1000 genomes]
rs73753928	1.00[AMR][1000 genomes]
rs7710993	1.00[AMR][1000 genomes]
rs7730859	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1028089	chr5:15636285-15883910	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv537676	chr5:15636285-15883910	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1024248	chr5:15638067-15863583	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv537677	chr5:15638067-15863583	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
9	esv2763894	chr5:15714022-15863332	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1031483	chr5:15738485-15926083	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv461986	chr5:15854098-15943683	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
12	nsv597292	chr5:15854098-15943683	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15849800-15854600	Enhancers	Fetal Heart	heart
2	chr5:15851200-15856400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:15851400-15854600	Enhancers	Fetal Lung	lung
4	chr5:15851400-15856400	Weak transcription	Aorta	Aorta
5	chr5:15851800-15870400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:15852800-15854600	Weak transcription	HUVEC	blood vessel
7	chr5:15853400-15865200	Weak transcription	Ovary	ovary
8	chr5:15853800-15854800	Weak transcription	Adipose Nuclei	Adipose
9	chr5:15853800-15856400	Weak transcription	Psoas Muscle	Psoas
10	chr5:15853800-15861400	Weak transcription	Fetal Muscle Leg	muscle
11	chr5:15854000-15856400	Weak transcription	Left Ventricle	heart

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