Variant report

Variant	rs73760616
Chromosome Location	chr5:58774683-58774684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1813481	1.00[AMR][1000 genomes]
rs1813482	1.00[AMR][1000 genomes]
rs1813483	1.00[AMR][1000 genomes]
rs3903515	1.00[AMR][1000 genomes]
rs55874040	1.00[AMR][1000 genomes]
rs55884041	1.00[AMR][1000 genomes]
rs56075849	1.00[AMR][1000 genomes]
rs56085550	1.00[AMR][1000 genomes]
rs56125266	1.00[AMR][1000 genomes]
rs56143170	1.00[AMR][1000 genomes]
rs56386809	1.00[AMR][1000 genomes]
rs58287048	1.00[AMR][1000 genomes]
rs59281772	1.00[AMR][1000 genomes]
rs59524261	1.00[AMR][1000 genomes]
rs59983793	1.00[AMR][1000 genomes]
rs6877740	1.00[AMR][1000 genomes]
rs73758503	1.00[AMR][1000 genomes]
rs73758504	1.00[AMR][1000 genomes]
rs73758505	1.00[AMR][1000 genomes]
rs73758506	1.00[AMR][1000 genomes]
rs73758507	1.00[AMR][1000 genomes]
rs73758509	1.00[AMR][1000 genomes]
rs73758510	1.00[AMR][1000 genomes]
rs73758511	1.00[AMR][1000 genomes]
rs73758512	1.00[AMR][1000 genomes]
rs73758513	1.00[AMR][1000 genomes]
rs73758690	1.00[AMR][1000 genomes]
rs73758692	1.00[AMR][1000 genomes]
rs73758693	1.00[AMR][1000 genomes]
rs73758694	1.00[AMR][1000 genomes]
rs73758695	1.00[AMR][1000 genomes]
rs73758699	1.00[AMR][1000 genomes]
rs73758700	1.00[AMR][1000 genomes]
rs73758701	1.00[AMR][1000 genomes]
rs73758840	1.00[AMR][1000 genomes]
rs73758841	1.00[AMR][1000 genomes]
rs73758842	1.00[AMR][1000 genomes]
rs73760303	1.00[AMR][1000 genomes]
rs73760305	1.00[AMR][1000 genomes]
rs73760361	1.00[AMR][1000 genomes]
rs73760362	1.00[AMR][1000 genomes]
rs73760365	1.00[AMR][1000 genomes]
rs73760618	1.00[AMR][1000 genomes]
rs73760620	1.00[AMR][1000 genomes]
rs73760622	1.00[AMR][1000 genomes]
rs73761528	1.00[AMR][1000 genomes]
rs73761530	1.00[AMR][1000 genomes]
rs7723589	1.00[AMR][1000 genomes]
rs7735649	1.00[AMR][1000 genomes]
rs7735819	1.00[AMR][1000 genomes]
rs931856	1.00[AMR][1000 genomes]
rs931857	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1028022	chr5:58673780-58786468	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv598254	chr5:58715782-58923601	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv881706	chr5:58730111-58865857	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv881707	chr5:58741491-58784102	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58754600-58780200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:58756800-58775400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr5:58756800-58775600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr5:58762000-58778800	Weak transcription	Aorta	Aorta
5	chr5:58762600-58780600	Weak transcription	Fetal Lung	lung
6	chr5:58766000-58774800	Weak transcription	Brain Substantia Nigra	brain
7	chr5:58768800-58779400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr5:58770200-58779400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr5:58772200-58776200	Weak transcription	Psoas Muscle	Psoas
10	chr5:58773600-58774800	Strong transcription	A549	lung
11	chr5:58773800-58776400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:58774000-58783600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr5:58774600-58783000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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