Variant report

Variant	rs73761212
Chromosome Location	chr6:77552260-77552261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs56051150	0.93[AFR][1000 genomes]
rs58665605	0.93[AFR][1000 genomes]
rs73758002	1.00[AFR][1000 genomes]
rs73758004	1.00[AFR][1000 genomes]
rs73758006	1.00[AFR][1000 genomes]
rs73758007	1.00[AFR][1000 genomes]
rs73758011	0.93[AFR][1000 genomes]
rs73758012	0.93[AFR][1000 genomes]
rs73758013	0.93[AFR][1000 genomes]
rs73761203	1.00[AFR][1000 genomes]
rs73761204	1.00[AFR][1000 genomes]
rs73761205	1.00[AFR][1000 genomes]
rs73761206	1.00[AFR][1000 genomes]
rs73761207	1.00[AFR][1000 genomes]
rs73761208	1.00[AFR][1000 genomes]
rs73761209	1.00[AFR][1000 genomes]
rs73761210	1.00[AFR][1000 genomes]
rs73761213	1.00[AFR][1000 genomes]
rs73761214	1.00[AFR][1000 genomes]
rs73761215	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830701	chr6:77509152-77678602	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77545400-77552800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:77548200-77553200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:77548400-77553600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:77552000-77552400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:77552200-77552400	Enhancers	Fetal Intestine Small	intestine
6	chr6:77552200-77553200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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