Variant report

Variant	rs73766300
Chromosome Location	chr5:80973879-80973880
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:80971757..80974379-chr5:80975193..80977880,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11952518	0.85[AMR][1000 genomes]
rs56171371	0.85[AMR][1000 genomes]
rs57455684	0.85[AMR][1000 genomes]
rs57679797	0.85[AMR][1000 genomes]
rs57695076	0.85[AMR][1000 genomes]
rs60796217	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60863858	0.85[AMR][1000 genomes]
rs60916090	0.93[AFR][1000 genomes]
rs6452421	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6872753	1.00[AMR][1000 genomes]
rs6893327	0.85[AMR][1000 genomes]
rs6897697	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766271	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766289	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766290	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766295	0.85[AMR][1000 genomes]
rs73766298	0.85[AMR][1000 genomes]
rs73768105	0.85[AMR][1000 genomes]
rs73768115	0.85[AMR][1000 genomes]
rs73768119	0.85[AMR][1000 genomes]
rs73768120	0.85[AMR][1000 genomes]
rs73768122	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73768123	1.00[AMR][1000 genomes]
rs7719738	0.85[AMR][1000 genomes]
rs7728066	0.85[AMR][1000 genomes]
rs7735543	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882233	chr5:80849084-81049187	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv882235	chr5:80909132-81006061	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830361	chr5:80909811-81080409	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv882236	chr5:80930992-80999768	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv882237	chr5:80938489-81006061	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3345018	chr5:80972245-80998709	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3330268	chr5:80972245-81001669	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80921200-80983000	Weak transcription	Aorta	Aorta
2	chr5:80945600-80985400	Weak transcription	Fetal Kidney	kidney
3	chr5:80950200-80975600	Weak transcription	Thymus	Thymus
4	chr5:80963400-80983200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:80963400-80983400	Weak transcription	Left Ventricle	heart
6	chr5:80963400-80983800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:80967400-80980000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr5:80967400-80991400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr5:80971200-80995800	Weak transcription	HSMMtube	muscle
10	chr5:80972200-80974400	Weak transcription	Primary T cells from cord blood	blood
11	chr5:80972600-80977000	Weak transcription	Fetal Thymus	thymus
12	chr5:80973400-80974000	Enhancers	Fetal Heart	heart
13	chr5:80973400-80990000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:80973600-80974000	Enhancers	Colon Smooth Muscle	Colon
15	chr5:80973600-80976000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
16	chr5:80973800-80974000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
17	chr5:80973800-80978800	Weak transcription	Dnd41	blood
18	chr5:80973800-80980400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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