Variant report

Variant	rs73772053
Chromosome Location	chr5:92410219-92410220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56041319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59985108	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60523492	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60800529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772045	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772046	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772052	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1022712	chr5:92191693-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1028930	chr5:92194772-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv830399	chr5:92290915-92462490	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92402000-92414200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:92405000-92413800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:92405600-92413400	Weak transcription	Ovary	ovary
4	chr5:92407000-92412400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:92408200-92413000	Weak transcription	GM12878-XiMat	blood
6	chr5:92408600-92410600	Enhancers	Osteobl	bone
7	chr5:92408600-92410800	Enhancers	NHDF-Ad	bronchial
8	chr5:92409000-92410800	Enhancers	Placenta Amnion	Placenta Amnion
9	chr5:92409000-92411400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:92409000-92413800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:92409400-92412000	Weak transcription	HSMM	muscle
12	chr5:92409400-92413200	Weak transcription	NH-A	brain
13	chr5:92409400-92413800	Weak transcription	Fetal Lung	lung
14	chr5:92409600-92412000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:92409600-92412200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:92409600-92412400	Weak transcription	HSMMtube	muscle
17	chr5:92409600-92412400	Weak transcription	NHLF	lung
18	chr5:92409600-92413800	Weak transcription	HUVEC	blood vessel
19	chr5:92409600-92414000	Weak transcription	NHEK	skin
20	chr5:92409600-92414200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr5:92409600-92414200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr5:92409600-92414200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:92409800-92410400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr5:92409800-92413200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr5:92410000-92413000	Weak transcription	HMEC	breast

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