Variant report

Variant	rs73772968
Chromosome Location	chr5:97854552-97854553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10043870	1.00[EUR][1000 genomes]
rs1421635	1.00[EUR][1000 genomes]
rs17166187	1.00[EUR][1000 genomes]
rs17166195	1.00[EUR][1000 genomes]
rs17166198	1.00[EUR][1000 genomes]
rs17166210	1.00[EUR][1000 genomes]
rs17166218	1.00[EUR][1000 genomes]
rs17166224	1.00[EUR][1000 genomes]
rs60190260	1.00[EUR][1000 genomes]
rs60740011	1.00[EUR][1000 genomes]
rs60839554	1.00[EUR][1000 genomes]
rs6859395	1.00[EUR][1000 genomes]
rs6870416	1.00[EUR][1000 genomes]
rs6871563	1.00[EUR][1000 genomes]
rs6875233	1.00[EUR][1000 genomes]
rs73159254	1.00[EUR][1000 genomes]
rs73772970	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73773002	1.00[EUR][1000 genomes]
rs73777006	1.00[EUR][1000 genomes]
rs73777023	1.00[EUR][1000 genomes]
rs9764305	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97846000-97857600	Weak transcription	Pancreas	Pancrea
2	chr5:97846000-97859000	Weak transcription	Gastric	stomach
3	chr5:97850600-97855400	Weak transcription	HSMM	muscle
4	chr5:97852600-97854600	Enhancers	Duodenum Mucosa	Duodenum
5	chr5:97852800-97857000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:97853200-97855600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:97853200-97855800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:97853400-97854600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:97853400-97854800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:97853400-97855000	Enhancers	Fetal Intestine Small	intestine
11	chr5:97853800-97855400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr5:97853800-97856600	Weak transcription	Fetal Muscle Leg	muscle
13	chr5:97854000-97855200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr5:97854000-97855400	Weak transcription	NHDF-Ad	bronchial
15	chr5:97854200-97856200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr5:97854200-97859400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:97854400-97856800	Weak transcription	Fetal Intestine Large	intestine
18	chr5:97854400-97859400	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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