Variant report

Variant	rs73776004
Chromosome Location	chr5:98146468-98146469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:98144623..98147225-chr5:98149000..98150777,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10515284	0.85[EUR][1000 genomes]
rs1069182	0.85[AFR][1000 genomes]
rs11948998	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11952820	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11953096	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11956636	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958835	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs170734	0.85[AFR][1000 genomes]
rs17166414	0.81[EUR][1000 genomes]
rs17166423	0.81[EUR][1000 genomes]
rs17166428	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17166439	0.81[EUR][1000 genomes]
rs2164986	0.81[EUR][1000 genomes]
rs3179904	0.85[EUR][1000 genomes]
rs327810	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36011435	0.81[EUR][1000 genomes]
rs55844753	0.83[ASN][1000 genomes]
rs55862038	1.00[ASN][1000 genomes]
rs56232429	0.93[EUR][1000 genomes]
rs56331326	0.85[EUR][1000 genomes]
rs56400831	0.81[EUR][1000 genomes]
rs56898185	1.00[ASN][1000 genomes]
rs58224759	1.00[ASN][1000 genomes]
rs59181854	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59325325	1.00[ASN][1000 genomes]
rs61199566	1.00[ASN][1000 genomes]
rs6596551	1.00[ASN][1000 genomes]
rs6866527	0.85[EUR][1000 genomes]
rs6866629	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6880359	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6893282	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs727637	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73776005	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73776017	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73776026	0.81[ASN][1000 genomes]
rs73776027	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73776028	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73776032	0.81[ASN][1000 genomes]
rs7705786	0.85[EUR][1000 genomes]
rs7726329	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs992773	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882414	chr5:98063710-98193164	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv882415	chr5:98134186-98312447	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv882416	chr5:98146106-98312447	Bivalent/Poised TSS Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98132600-98154000	Weak transcription	HSMM	muscle
2	chr5:98143000-98149200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:98144600-98148400	Weak transcription	NHDF-Ad	bronchial

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