Variant report

Variant	rs73787049
Chromosome Location	chr6:166642599-166642600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10428861	1.00[AMR][1000 genomes]
rs3099272	1.00[AMR][1000 genomes]
rs3099273	1.00[AMR][1000 genomes]
rs3099274	1.00[AMR][1000 genomes]
rs3099275	1.00[AMR][1000 genomes]
rs3099277	1.00[AMR][1000 genomes]
rs3099278	1.00[AMR][1000 genomes]
rs3127351	1.00[AMR][1000 genomes]
rs3127353	1.00[AMR][1000 genomes]
rs3127354	1.00[AMR][1000 genomes]
rs55987387	1.00[AMR][1000 genomes]
rs57391649	1.00[AMR][1000 genomes]
rs57545167	1.00[AMR][1000 genomes]
rs58812582	1.00[AMR][1000 genomes]
rs59151797	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60819315	1.00[AMR][1000 genomes]
rs61611265	1.00[AMR][1000 genomes]
rs6902208	1.00[AMR][1000 genomes]
rs73265201	1.00[AMR][1000 genomes]
rs73787031	1.00[AMR][1000 genomes]
rs73787034	1.00[AMR][1000 genomes]
rs73787040	1.00[AMR][1000 genomes]
rs73787055	1.00[AMR][1000 genomes]
rs73787058	1.00[AMR][1000 genomes]
rs73787070	1.00[AMR][1000 genomes]
rs73788284	1.00[AMR][1000 genomes]
rs7449736	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029993	chr6:166621852-166695791	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538537	chr6:166621852-166695791	Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166642000-166643200	Flanking Active TSS	Dnd41	blood
2	chr6:166642000-166643800	Enhancers	Fetal Thymus	thymus
3	chr6:166642200-166642600	Flanking Active TSS	Primary T cells from cord blood	blood
4	chr6:166642400-166642600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
5	chr6:166642400-166642600	Bivalent Enhancer	Duodenum Mucosa	Duodenum
6	chr6:166642400-166642600	Bivalent Enhancer	Fetal Kidney	kidney
7	chr6:166642400-166642800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr6:166642400-166643000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
9	chr6:166642400-166643000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:166642400-166643000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:166642400-166643200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:166642400-166643200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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