Variant report

Variant	rs73787058
Chromosome Location	chr6:166654494-166654495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10428861	1.00[AMR][1000 genomes]
rs3099272	1.00[AMR][1000 genomes]
rs3099273	1.00[AMR][1000 genomes]
rs3099274	1.00[AMR][1000 genomes]
rs3099275	1.00[AMR][1000 genomes]
rs3099277	1.00[AMR][1000 genomes]
rs3099278	1.00[AMR][1000 genomes]
rs3127351	1.00[AMR][1000 genomes]
rs3127353	1.00[AMR][1000 genomes]
rs3127354	1.00[AMR][1000 genomes]
rs55987387	1.00[AMR][1000 genomes]
rs57391649	1.00[AMR][1000 genomes]
rs57545167	1.00[AMR][1000 genomes]
rs58812582	1.00[AMR][1000 genomes]
rs59151797	1.00[AMR][1000 genomes]
rs60819315	1.00[AMR][1000 genomes]
rs61611265	1.00[AMR][1000 genomes]
rs6902208	1.00[AMR][1000 genomes]
rs73265201	1.00[AMR][1000 genomes]
rs73787031	1.00[AMR][1000 genomes]
rs73787034	1.00[AMR][1000 genomes]
rs73787040	1.00[AMR][1000 genomes]
rs73787049	1.00[AMR][1000 genomes]
rs73787051	0.86[AFR][1000 genomes]
rs73787055	1.00[AMR][1000 genomes]
rs73787070	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73788284	1.00[AMR][1000 genomes]
rs7449736	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029993	chr6:166621852-166695791	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538537	chr6:166621852-166695791	Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166650600-166654600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:166650600-166657600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:166651400-166657600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:166651800-166655000	Weak transcription	Thymus	Thymus
5	chr6:166651800-166655000	Weak transcription	Dnd41	blood
6	chr6:166653800-166655000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:166654000-166654600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
8	chr6:166654000-166654800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:166654000-166655200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
10	chr6:166654400-166654600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
11	chr6:166654400-166655600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:166654400-166659000	Enhancers	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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