Variant report

Variant	rs73787192
Chromosome Location	chr6:166457866-166457867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10428861	1.00[AMR][1000 genomes]
rs3099272	1.00[AMR][1000 genomes]
rs3099273	1.00[AMR][1000 genomes]
rs3099274	1.00[AMR][1000 genomes]
rs3099275	1.00[AMR][1000 genomes]
rs3099277	1.00[AMR][1000 genomes]
rs3099278	1.00[AMR][1000 genomes]
rs3127351	1.00[AMR][1000 genomes]
rs3127353	1.00[AMR][1000 genomes]
rs3127354	1.00[AMR][1000 genomes]
rs55987387	1.00[AMR][1000 genomes]
rs57391649	1.00[AMR][1000 genomes]
rs57545167	1.00[AMR][1000 genomes]
rs58812582	1.00[AMR][1000 genomes]
rs59151797	1.00[AMR][1000 genomes]
rs60819315	1.00[AMR][1000 genomes]
rs61611265	1.00[AMR][1000 genomes]
rs73787031	1.00[AMR][1000 genomes]
rs73787034	1.00[AMR][1000 genomes]
rs73787040	1.00[AMR][1000 genomes]
rs7449736	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016999	chr6:165979351-166480502	Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv538534	chr6:165979351-166480502	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166454400-166459600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:166454600-166459400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:166454600-166459600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:166455000-166458200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:166455800-166459600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links