Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12109252	0.88[EUR][1000 genomes]
rs13171299	0.84[ASN][1000 genomes]
rs1567520	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17144520	0.84[ASN][1000 genomes]
rs17144526	0.84[ASN][1000 genomes]
rs17144551	0.84[ASN][1000 genomes]
rs17440213	0.88[EUR][1000 genomes]
rs2376854	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28640997	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56034428	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57186800	0.87[EUR][1000 genomes]
rs57503789	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58737380	0.89[EUR][1000 genomes]
rs58999502	0.84[ASN][1000 genomes]
rs60688439	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62374076	0.82[AFR][1000 genomes]
rs6862297	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6892437	0.89[EUR][1000 genomes]
rs6896086	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73249197	0.84[ASN][1000 genomes]
rs73790355	0.91[EUR][1000 genomes]
rs73792413	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73792414	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7710339	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7724403	0.93[EUR][1000 genomes]
rs7724753	0.85[EUR][1000 genomes]
rs849728	0.81[AFR][1000 genomes]
rs888711	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032241	chr5:117900051-118157400	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv882769	chr5:118088385-118154368	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv599562	chr5:118122504-118230640	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118127000-118160000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:118138000-118146000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:118142800-118145600	Weak transcription	Aorta	Aorta
4	chr5:118143400-118178200	Weak transcription	Left Ventricle	heart
5	chr5:118144400-118145800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:118144800-118149000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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