Variant report

Variant	rs73790355
Chromosome Location	chr5:118235990-118235991
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118235181..118238389-chr5:118238793..118240582,3	K562	blood:
2	chr5:118235222..118238389-chr5:118238793..118241310,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12109252	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1567520	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17381247	0.81[ASN][1000 genomes]
rs17440213	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2029036	0.81[ASN][1000 genomes]
rs2376854	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28640997	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55874944	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56034428	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56078901	0.87[ASN][1000 genomes]
rs57186800	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57503789	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58737380	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60688439	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6862297	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6870923	0.84[AFR][1000 genomes]
rs6892437	0.85[EUR][1000 genomes]
rs6896086	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73239065	0.87[ASN][1000 genomes]
rs73789435	0.91[EUR][1000 genomes]
rs73792413	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73792414	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7710339	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7722850	0.81[ASN][1000 genomes]
rs7724403	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7724753	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv882773	chr5:118175640-118241854	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv599563	chr5:118191798-118241854	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118216600-118244800	Weak transcription	Primary T cells from cord blood	blood
2	chr5:118218800-118240600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:118225000-118247000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:118225400-118300400	Weak transcription	Primary B cells from cord blood	blood
5	chr5:118227400-118270600	Weak transcription	Ovary	ovary
6	chr5:118233400-118238200	Weak transcription	Stomach Mucosa	stomach
7	chr5:118233400-118259000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:118233800-118289200	Weak transcription	Psoas Muscle	Psoas

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