Variant report

Variant	rs73790809
Chromosome Location	chr5:118673369-118673370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:118604157..118605993-chr5:118671344..118674136,2	MCF-7	breast:
2	chr5:118672680..118674679-chr5:118676635..118678463,2	K562	blood:
3	chr5:118666908..118671699-chr5:118672968..118679055,7	K562	blood:

Variant related genes	Relation type
ENSG00000145779	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1973530	1.00[EUR][1000 genomes]
rs56218678	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73794108	1.00[EUR][1000 genomes]
rs73794122	1.00[EUR][1000 genomes]
rs73794124	1.00[EUR][1000 genomes]
rs73794126	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7722866	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024648	chr5:118608175-118678268	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv869828	chr5:118610548-118691190	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv599565	chr5:118661882-118691888	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv882775	chr5:118669094-118691888	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118659600-118677800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:118660200-118675600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:118660200-118678600	Weak transcription	HepG2	liver
4	chr5:118664200-118673400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr5:118664400-118678200	Weak transcription	Fetal Kidney	kidney
6	chr5:118665400-118677000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:118669200-118675600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:118669400-118677600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:118669600-118673600	Genic enhancers	Fetal Thymus	thymus
10	chr5:118670000-118675200	Enhancers	Dnd41	blood
11	chr5:118670400-118678200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr5:118670600-118673400	Weak transcription	Placenta	Placenta
13	chr5:118670800-118673400	Weak transcription	Pancreas	Pancrea
14	chr5:118670800-118673600	Weak transcription	Liver	Liver
15	chr5:118670800-118673600	Weak transcription	Right Ventricle	heart
16	chr5:118670800-118675800	Weak transcription	Lung	lung
17	chr5:118670800-118675800	Weak transcription	Right Atrium	heart
18	chr5:118670800-118677000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr5:118670800-118691000	Weak transcription	Aorta	Aorta
20	chr5:118671000-118676000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr5:118671200-118673400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr5:118671200-118673800	Weak transcription	Colonic Mucosa	Colon
23	chr5:118671200-118677000	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr5:118671200-118678400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr5:118671200-118680200	Enhancers	Thymus	Thymus
26	chr5:118671200-118681600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr5:118671200-118695400	Weak transcription	A549	lung
28	chr5:118671400-118675800	Enhancers	Duodenum Mucosa	Duodenum
29	chr5:118671400-118676000	Enhancers	Primary B cells from peripheral blood	blood
30	chr5:118671800-118674000	Enhancers	NHEK	skin
31	chr5:118671800-118674200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr5:118671800-118675200	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr5:118671800-118675800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr5:118671800-118680000	Enhancers	Primary hematopoietic stem cells	blood
35	chr5:118672000-118673600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr5:118672000-118673600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr5:118672000-118673600	Enhancers	Adipose Nuclei	Adipose
38	chr5:118672000-118673800	Weak transcription	Esophagus	oesophagus
39	chr5:118672000-118673800	Weak transcription	Spleen	Spleen
40	chr5:118672200-118673400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr5:118672200-118673400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr5:118672200-118673600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr5:118672200-118673600	Flanking Active TSS	Primary B cells from cord blood	blood
44	chr5:118672200-118673800	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr5:118672200-118674200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr5:118672200-118675200	Enhancers	Rectal Mucosa Donor 29	rectum
47	chr5:118672200-118675800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
48	chr5:118672200-118676800	Enhancers	Small Intestine	intestine
49	chr5:118672400-118673400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr5:118672400-118673600	Enhancers	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links