Variant report

Variant	rs73798045
Chromosome Location	chr5:151572865-151572866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr5:151572828-151573260	MCF-7	breast:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151523886..151524850-chr5:151572559..151573494,21	MCF-7	breast:
2	chr5:151565435..151567795-chr5:151572722..151574311,2	MCF-7	breast:
3	chr5:151523925..151524850-chr5:151572610..151573431,6	MCF-7	breast:
4	chr5:151572609..151573576-chr5:151667738..151668966,3	MCF-7	breast:
5	chr5:151523917..151524489-chr5:151572860..151573489,2	MCF-7	breast:
6	chr5:151565369..151567098-chr5:151571552..151573119,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs73271351	1.00[AMR][1000 genomes]
rs73795903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798920	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798921	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7711799	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7737877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760935	chr5:151463117-151586051	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv883040	chr5:151471642-151596273	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv5073	chr5:151551846-151597040	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151565600-151577800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:151571600-151573000	ZNF genes & repeats	Liver	Liver
3	chr5:151572400-151573200	Enhancers	Stomach Mucosa	stomach
4	chr5:151572600-151573400	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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