Variant report

Variant	rs73804464
Chromosome Location	chr5:178122906-178122907
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10064288	1.00[AMR][1000 genomes]
rs55761260	1.00[AMR][1000 genomes]
rs57664189	1.00[AMR][1000 genomes]
rs58688767	1.00[AMR][1000 genomes]
rs59187120	1.00[AMR][1000 genomes]
rs60234011	1.00[AMR][1000 genomes]
rs60420956	1.00[AMR][1000 genomes]
rs61676284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73330651	1.00[AMR][1000 genomes]
rs73804321	1.00[AMR][1000 genomes]
rs73804465	1.00[AMR][1000 genomes]
rs73804466	1.00[AMR][1000 genomes]
rs73804467	1.00[AMR][1000 genomes]
rs73804481	1.00[AMR][1000 genomes]
rs73804489	1.00[AMR][1000 genomes]
rs7713372	1.00[AMR][1000 genomes]
rs7730430	1.00[AMR][1000 genomes]
rs7736895	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1023697	chr5:178070594-178126328	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537972	chr5:178070594-178126328	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv5155	chr5:178075100-178132799	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv883217	chr5:178099758-178193081	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178122000-178123000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:178122000-178123200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr5:178122400-178123200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:178122400-178123200	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr5:178122600-178123000	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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