Variant report

Variant	rs73814663
Chromosome Location	chr4:48092090-48092091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:47914479..47917271-chr4:48091947..48094174,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163293	Chromatin interaction
ENSG00000170448	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73814675	1.00[AFR][1000 genomes]
rs73814676	1.00[AFR][1000 genomes]
rs73814677	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48067600-48102400	Strong transcription	Primary T helper cells fromperipheralblood	blood
2	chr4:48070800-48105200	Weak transcription	GM12878-XiMat	blood
3	chr4:48076600-48092400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr4:48081600-48094200	Weak transcription	Pancreas	Pancrea
5	chr4:48083000-48098000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:48083000-48098200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr4:48083400-48098200	Strong transcription	Primary T cells from cord blood	blood
8	chr4:48084400-48098000	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr4:48084600-48101600	Strong transcription	Primary T helper cells PMA-I stimulated	--
10	chr4:48085200-48102400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr4:48086400-48099000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr4:48088600-48092800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:48088600-48092800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:48088600-48096600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:48088600-48104000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr4:48088600-48106000	Weak transcription	Fetal Thymus	thymus
17	chr4:48088600-48107800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr4:48088800-48092600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:48088800-48092600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr4:48088800-48105200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr4:48089800-48092800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr4:48090000-48100800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr4:48090800-48098600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
24	chr4:48091600-48101000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr4:48091800-48092600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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