Variant report

Variant	rs73816854
Chromosome Location	chr4:55811594-55811595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10027862	1.00[AMR][1000 genomes]
rs11930183	1.00[AMR][1000 genomes]
rs1380070	1.00[AMR][1000 genomes]
rs1497481	1.00[AMR][1000 genomes]
rs1543930	1.00[AMR][1000 genomes]
rs1543931	1.00[AMR][1000 genomes]
rs1551639	1.00[AMR][1000 genomes]
rs17085066	1.00[AMR][1000 genomes]
rs1870380	1.00[AMR][1000 genomes]
rs4352535	1.00[AMR][1000 genomes]
rs57190330	1.00[AMR][1000 genomes]
rs59384774	1.00[AMR][1000 genomes]
rs60067051	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6824124	1.00[AMR][1000 genomes]
rs6826761	1.00[AMR][1000 genomes]
rs6835605	1.00[AMR][1000 genomes]
rs73816855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73816856	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73818439	1.00[AMR][1000 genomes]
rs7666097	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55806800-55812600	Enhancers	Fetal Thymus	thymus
2	chr4:55808200-55812600	Enhancers	HUVEC	blood vessel
3	chr4:55808400-55812000	Weak transcription	Adipose Nuclei	Adipose
4	chr4:55808400-55812600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr4:55808400-55812600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr4:55808600-55813000	Enhancers	Primary T cells from cord blood	blood
7	chr4:55809200-55811800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr4:55809200-55812600	Enhancers	Primary hematopoietic stem cells	blood
9	chr4:55809200-55814000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:55809400-55813000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:55809600-55811600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:55809800-55811800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:55810200-55811800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr4:55810400-55811600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr4:55810800-55812000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr4:55811000-55812200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:55811000-55812400	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr4:55811200-55811800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr4:55811400-55812200	Enhancers	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links