Variant report

Variant	rs73822026
Chromosome Location	chr3:21772063-21772064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17009055	1.00[AMR][1000 genomes]
rs17009064	1.00[AMR][1000 genomes]
rs17009069	1.00[AMR][1000 genomes]
rs3911497	1.00[AMR][1000 genomes]
rs55967962	1.00[AMR][1000 genomes]
rs56330701	1.00[AMR][1000 genomes]
rs58049694	1.00[AMR][1000 genomes]
rs58525325	1.00[AMR][1000 genomes]
rs6766667	1.00[AMR][1000 genomes]
rs73819308	1.00[AMR][1000 genomes]
rs73819309	1.00[AMR][1000 genomes]
rs73819310	1.00[AMR][1000 genomes]
rs73819961	1.00[AMR][1000 genomes]
rs9811558	1.00[AMR][1000 genomes]
rs9839117	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1007048	chr3:21666807-21865229	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv536516	chr3:21666807-21865229	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21770000-21773600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:21770600-21777400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:21770800-21772200	Enhancers	NH-A	brain
4	chr3:21770800-21772400	Enhancers	HMEC	breast
5	chr3:21770800-21772400	Enhancers	HSMM	muscle
6	chr3:21771000-21772400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:21771000-21772400	Enhancers	NHDF-Ad	bronchial
8	chr3:21771200-21772200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:21771200-21772200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:21771200-21772200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:21771400-21772200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:21771400-21772200	Enhancers	Osteobl	bone
13	chr3:21771400-21772400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:21771600-21779200	Weak transcription	Aorta	Aorta
15	chr3:21771800-21772800	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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