Variant report

Variant	rs73828029
Chromosome Location	chr4:79483870-79483871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79476370..79478643-chr4:79482902..79485016,2	K562	blood:
2	chr4:79481834..79484233-chr4:79484393..79486934,3	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10452151	1.00[AMR][1000 genomes]
rs55994157	1.00[AMR][1000 genomes]
rs56071306	1.00[AMR][1000 genomes]
rs56098630	1.00[AMR][1000 genomes]
rs57648305	1.00[AMR][1000 genomes]
rs57649400	1.00[AMR][1000 genomes]
rs59055207	1.00[AMR][1000 genomes]
rs59700988	1.00[AMR][1000 genomes]
rs60681937	1.00[AMR][1000 genomes]
rs60950346	1.00[AMR][1000 genomes]
rs60998921	1.00[AMR][1000 genomes]
rs61075598	1.00[AMR][1000 genomes]
rs61238857	1.00[AMR][1000 genomes]
rs73828034	1.00[AMR][1000 genomes]
rs73828038	1.00[AMR][1000 genomes]
rs73828045	1.00[AMR][1000 genomes]
rs73828046	1.00[AMR][1000 genomes]
rs73828057	1.00[AMR][1000 genomes]
rs73828059	1.00[AMR][1000 genomes]
rs73828064	1.00[AMR][1000 genomes]
rs73828065	1.00[AMR][1000 genomes]
rs73828066	1.00[AMR][1000 genomes]
rs73828067	1.00[AMR][1000 genomes]
rs73828069	1.00[AMR][1000 genomes]
rs73828070	1.00[AMR][1000 genomes]
rs73828071	1.00[AMR][1000 genomes]
rs73828073	1.00[AMR][1000 genomes]
rs73828074	1.00[AMR][1000 genomes]
rs73828075	1.00[AMR][1000 genomes]
rs73828078	1.00[AMR][1000 genomes]
rs73828079	1.00[AMR][1000 genomes]
rs73828080	1.00[AMR][1000 genomes]
rs73828081	1.00[AMR][1000 genomes]
rs73828083	1.00[AMR][1000 genomes]
rs73828092	1.00[AMR][1000 genomes]
rs73828098	1.00[AMR][1000 genomes]
rs73828100	1.00[AMR][1000 genomes]
rs73828102	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79473400-79485400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:79473600-79487200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:79474400-79486600	Weak transcription	Psoas Muscle	Psoas
4	chr4:79474400-79527200	Weak transcription	Spleen	Spleen
5	chr4:79474600-79488200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr4:79476800-79486600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:79478800-79484200	Genic enhancers	NHEK	skin
8	chr4:79478800-79484800	Genic enhancers	Primary neutrophils fromperipheralblood	blood
9	chr4:79478800-79489800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:79480000-79484200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:79481200-79484000	Enhancers	NH-A	brain
12	chr4:79481400-79484000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr4:79481400-79484000	Enhancers	Stomach Mucosa	stomach
14	chr4:79481400-79484400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr4:79481400-79484400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr4:79481400-79484600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr4:79481600-79484600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr4:79481600-79484600	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr4:79481800-79521000	Weak transcription	Right Ventricle	heart
20	chr4:79482200-79484000	Enhancers	Colon Smooth Muscle	Colon
21	chr4:79482400-79486400	Weak transcription	Lung	lung
22	chr4:79482400-79494800	Weak transcription	Left Ventricle	heart
23	chr4:79482600-79487200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr4:79482600-79487200	Weak transcription	Placenta	Placenta
25	chr4:79482600-79488000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr4:79482600-79490600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr4:79482800-79484000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr4:79482800-79484000	Weak transcription	Gastric	stomach
29	chr4:79482800-79486600	Weak transcription	Right Atrium	heart
30	chr4:79482800-79486800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr4:79482800-79488000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr4:79482800-79490800	Weak transcription	Fetal Stomach	stomach
33	chr4:79482800-79505000	Weak transcription	Fetal Lung	lung
34	chr4:79483000-79484000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr4:79483000-79484600	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr4:79483000-79485000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr4:79483000-79485400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr4:79483000-79485600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr4:79483000-79486200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr4:79483000-79486600	Weak transcription	Esophagus	oesophagus
41	chr4:79483000-79486800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr4:79483000-79487000	Weak transcription	Fetal Heart	heart
43	chr4:79483000-79487000	Weak transcription	Rectal Smooth Muscle	rectum
44	chr4:79483000-79488000	Weak transcription	Pancreas	Pancrea
45	chr4:79483000-79489800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr4:79483000-79490600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr4:79483000-79490600	Weak transcription	Aorta	Aorta
48	chr4:79483000-79493200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr4:79483000-79530000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr4:79483200-79484000	Weak transcription	H1 Cell Line	embryonic stem cell

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