Variant report

Variant	rs73828204
Chromosome Location	chr4:80004142-80004143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs57602269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57941709	0.83[AFR][1000 genomes]
rs58561548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73828203	1.00[AFR][1000 genomes]
rs73828229	1.00[AMR][1000 genomes]
rs73830226	1.00[AMR][1000 genomes]
rs73830239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830262	1.00[AMR][1000 genomes]
rs73830269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830280	1.00[AFR][1000 genomes]
rs73830281	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829979	chr4:79819168-80019159	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3448470	chr4:79898340-80026510	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80000200-80004200	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:80000800-80004600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:80003600-80004600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr4:80003600-80004600	Enhancers	Rectal Smooth Muscle	rectum
5	chr4:80003800-80005400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:80003800-80006000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:80004000-80004200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:80004000-80004600	Flanking Active TSS	Fetal Heart	heart
9	chr4:80004000-80005200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr4:80004000-80005400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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