Variant report

Variant	rs73828229
Chromosome Location	chr4:80106434-80106435
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs58561548	1.00[AMR][1000 genomes]
rs73828204	1.00[AMR][1000 genomes]
rs73830226	1.00[AMR][1000 genomes]
rs73830239	1.00[AMR][1000 genomes]
rs73830240	1.00[AMR][1000 genomes]
rs73830242	1.00[AMR][1000 genomes]
rs73830243	1.00[AMR][1000 genomes]
rs73830246	1.00[AMR][1000 genomes]
rs73830250	1.00[AMR][1000 genomes]
rs73830251	1.00[AMR][1000 genomes]
rs73830252	1.00[AMR][1000 genomes]
rs73830253	1.00[AMR][1000 genomes]
rs73830254	1.00[AMR][1000 genomes]
rs73830258	1.00[AMR][1000 genomes]
rs73830262	1.00[AMR][1000 genomes]
rs73830269	1.00[AMR][1000 genomes]
rs73830271	1.00[AMR][1000 genomes]
rs73830272	1.00[AMR][1000 genomes]
rs73830274	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1014428	chr4:80089712-80132813	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80104600-80106600	Enhancers	Fetal Brain Female	brain
2	chr4:80105400-80106600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:80105400-80106600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr4:80105400-80107200	Enhancers	Fetal Stomach	stomach
5	chr4:80105600-80107200	Enhancers	Fetal Lung	lung
6	chr4:80105800-80107800	Enhancers	Fetal Brain Male	brain
7	chr4:80106400-80106600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:80106400-80106600	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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