Variant report

Variant	rs73829293
Chromosome Location	chr3:42845147-42845148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr3:42844856-42846364	ECC-1	luminal epithelium:	n/a	n/a
2	HCFC1	chr3:42844736-42846542	K562	blood:	n/a	n/a
3	PML	chr3:42844995-42846528	K562	blood:	n/a	n/a
4	POLR2A	chr3:42844704-42846529	H1-neurons	neurons:	n/a	n/a
5	HEY1	chr3:42844560-42846500	HepG2	liver:	n/a	chr3:42846053-42846068
6	POLR2A	chr3:42844540-42846352	GM12878	blood:	n/a	n/a
7	MAX	chr3:42844729-42845459	MCF-7	breast:	n/a	n/a
8	ELF1	chr3:42845001-42845299	HepG2	liver:	n/a	n/a
9	POLR2A	chr3:42842603-42847269	HepG2	liver:	n/a	n/a
10	IRF1	chr3:42844400-42846574	K562	blood:	n/a	chr3:42845453-42845462 chr3:42846019-42846028
11	RCOR1	chr3:42844934-42846361	Hela-S3	cervix:	n/a	n/a
12	MXI1	chr3:42845017-42846376	GM12878	blood:	n/a	n/a
13	SIN3A	chr3:42844719-42847111	H1-hESC	embryonic stem cell:	n/a	chr3:42846333-42846344
14	YY1	chr3:42844706-42845350	ECC-1	luminal epithelium:	n/a	n/a
15	ZC3H11A	chr3:42844112-42845469	K562	blood:	n/a	n/a
16	BACH1	chr3:42844991-42846528	H1-hESC	embryonic stem cell:	n/a	n/a
17	POLR2A	chr3:42844682-42846406	K562	blood:	n/a	n/a
18	TAF1	chr3:42844783-42846421	K562	blood:	n/a	n/a
19	POLR2A	chr3:42844853-42846422	K562	blood:	n/a	n/a
20	TRIM28	chr3:42845022-42846182	K562	blood:	n/a	n/a
21	POLR2A	chr3:42845047-42846427	GM19193	blood:	n/a	n/a
22	MAX	chr3:42844697-42846679	K562	blood:	n/a	n/a
23	POLR2A	chr3:42844342-42846921	PBDE	blood:	n/a	n/a
24	ELF1	chr3:42844756-42845607	K562	blood:	n/a	n/a
25	TAF1	chr3:42844839-42846509	ECC-1	luminal epithelium:	n/a	n/a
26	POLR2A	chr3:42844756-42846315	H1-hESC	embryonic stem cell:	n/a	n/a
27	CTCF	chr3:42845020-42845170	HMEC	breast:	n/a	n/a
28	POLR2A	chr3:42844634-42846519	GM12892	blood:	n/a	n/a
29	POLR2A	chr3:42844836-42846422	K562	blood:	n/a	n/a
30	POLR2A	chr3:42841822-42846994	MCF10A-Er-Src	breast:	n/a	n/a
31	EP300	chr3:42844692-42846652	GM12878	blood:	n/a	chr3:42845030-42845037 chr3:42845122-42845129
32	TBP	chr3:42844878-42847203	HepG2	liver:	n/a	n/a
33	POLR2A	chr3:42845135-42846467	GM12892	blood:	n/a	n/a
34	HA-E2F1	chr3:42845112-42846425	MCF-7	breast:	n/a	chr3:42846019-42846028 chr3:42845870-42845882
35	YY1	chr3:42844598-42846358	K562	blood:	n/a	chr3:42846294-42846303 chr3:42845512-42845523 chr3:42845878-42845887
36	RFX5	chr3:42844971-42845343	GM12878	blood:	n/a	n/a
37	TAF1	chr3:42844669-42846455	H1-hESC	embryonic stem cell:	n/a	n/a
38	ZBTB7A	chr3:42845142-42846476	K562	blood:	n/a	n/a
39	POLR2A	chr3:42844558-42847298	K562	blood:	n/a	n/a
40	HCFC1	chr3:42844436-42846538	Hela-S3	cervix:	n/a	n/a
41	POLR2A	chr3:42844823-42845166	GM12878	blood:	n/a	n/a
42	POLR2A	chr3:42844750-42846509	GM18505	blood:	n/a	n/a
43	RFX5	chr3:42844181-42847194	SK-N-SH	brain:	n/a	chr3:42845776-42845785 chr3:42846020-42846029
44	HEY1	chr3:42844461-42846405	K562	blood:	n/a	chr3:42846053-42846068
45	HEY1	chr3:42844804-42847265	HepG2	liver:	n/a	chr3:42846053-42846068
46	POLR2A	chr3:42844559-42846417	H1-hESC	embryonic stem cell:	n/a	n/a
47	POLR2A	chr3:42844544-42846483	GM12878	blood:	n/a	n/a
48	MAX	chr3:42845129-42846362	SK-N-SH	brain:	n/a	n/a
49	YY1	chr3:42844640-42845155	GM12892	blood:	n/a	n/a
50	TEAD4	chr3:42844527-42846495	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:42841845..42845236-chr3:42855285..42858253,3	K562	blood:
2	chr3:42843855..42845411-chr3:42851834..42853689,2	K562	blood:
3	chr3:42843293..42845569-chr3:44276181..44278757,2	K562	blood:
4	chr3:42747563..42749919-chr3:42844077..42845877,2	K562	blood:
5	chr3:42843552..42845487-chr3:42920948..42923647,2	K562	blood:
6	chr3:42841907..42845904-chr3:42858547..42863038,5	K562	blood:
7	chr3:42542919..42545079-chr3:42843283..42845875,2	K562	blood:
8	chr3:42844655..42846546-chr3:42884884..42886933,2	K562	blood:
9	chr3:42820881..42822515-chr3:42843907..42845636,2	K562	blood:
10	chr3:42812718..42815694-chr3:42844363..42847706,3	K562	blood:
11	chr3:42842350..42845554-chr3:42847131..42848922,4	K562	blood:

Variant related genes	Relation type
ACKR2	TF binding region
ENSG00000114812	Chromatin interaction
ENSG00000244607	Chromatin interaction
ENSG00000144648	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13433851	0.83[AFR][1000 genomes]
rs13433945	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55914160	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73829292	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9811031	0.87[AFR][1000 genomes]
rs9831582	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9836850	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9837432	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9849297	0.93[AFR][1000 genomes]
rs9851661	0.86[AFR][1000 genomes]
rs9855749	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9864269	0.80[AFR][1000 genomes]
rs9866372	0.86[AFR][1000 genomes]
rs9877459	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9881713	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42843400-42845200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
2	chr3:42843400-42845400	Flanking Active TSS	Liver	Liver
3	chr3:42843600-42845200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:42843600-42845800	Active TSS	Right Atrium	heart
5	chr3:42843600-42846800	Active TSS	Right Ventricle	heart
6	chr3:42844000-42845200	Flanking Active TSS	Dnd41	blood
7	chr3:42844000-42846600	Active TSS	GM12878-XiMat	blood
8	chr3:42844200-42845200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:42844200-42845200	Flanking Active TSS	NH-A	brain
10	chr3:42844200-42845400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr3:42844200-42845400	Flanking Active TSS	Hela-S3	cervix
12	chr3:42844200-42846400	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr3:42844200-42846800	Active TSS	Left Ventricle	heart
14	chr3:42844200-42847000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr3:42844200-42847000	Active TSS	HSMM	muscle
16	chr3:42844400-42845200	Flanking Active TSS	Osteobl	bone
17	chr3:42844400-42845400	Flanking Active TSS	Primary B cells from cord blood	blood
18	chr3:42844400-42845400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:42844400-42845400	Flanking Active TSS	HUVEC	blood vessel
20	chr3:42844400-42845600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr3:42844400-42846200	Active TSS	H1 Cell Line	embryonic stem cell
22	chr3:42844400-42846400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:42844400-42846400	Active TSS	K562	blood
24	chr3:42844400-42846600	Active TSS	Psoas Muscle	Psoas
25	chr3:42844400-42846600	Active TSS	Stomach Mucosa	stomach
26	chr3:42844400-42847000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr3:42844600-42845200	Flanking Active TSS	Primary T cells from cord blood	blood
28	chr3:42844600-42845200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
29	chr3:42844600-42845200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
30	chr3:42844600-42845200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
31	chr3:42844600-42845200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
32	chr3:42844600-42845200	Flanking Active TSS	Brain Angular Gyrus	brain
33	chr3:42844600-42845200	Flanking Active TSS	Brain Hippocampus Middle	brain
34	chr3:42844600-42845200	Flanking Active TSS	Colonic Mucosa	Colon
35	chr3:42844600-42845200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
36	chr3:42844600-42845200	Flanking Active TSS	Fetal Lung	lung
37	chr3:42844600-42845200	Flanking Active TSS	Fetal Muscle Leg	muscle
38	chr3:42844600-42845200	Flanking Active TSS	Fetal Thymus	thymus
39	chr3:42844600-42845200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr3:42844600-42845200	Flanking Active TSS	Thymus	Thymus
41	chr3:42844600-42845400	Flanking Active TSS	Primary hematopoietic stem cells	blood
42	chr3:42844600-42845600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr3:42844600-42845600	Flanking Active TSS	Adipose Nuclei	Adipose
44	chr3:42844600-42845600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr3:42844600-42845800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr3:42844600-42845800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr3:42844600-42846200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr3:42844600-42846400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr3:42844600-42846600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr3:42844600-42846600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links