Variant report

Variant	rs73830733
Chromosome Location	chr3:46128613-46128614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46126220..46128716-chr3:46205313..46206814,2	MCF-7	breast:
2	chr3:46127005..46128993-chr3:46132615..46135304,2	K562	blood:
3	chr3:46123578..46126069-chr3:46127195..46129826,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1500006	1.00[AFR][1000 genomes]
rs17078579	1.00[AFR][1000 genomes]
rs57857531	1.00[AFR][1000 genomes]
rs58692140	1.00[AFR][1000 genomes]
rs59253523	1.00[AFR][1000 genomes]
rs59862185	1.00[AFR][1000 genomes]
rs60829665	1.00[AFR][1000 genomes]
rs73830722	0.83[AFR][1000 genomes]
rs73830725	0.83[AFR][1000 genomes]
rs73830726	0.94[AFR][1000 genomes]
rs73830728	1.00[AFR][1000 genomes]
rs73830737	1.00[AFR][1000 genomes]
rs73830745	1.00[AFR][1000 genomes]
rs73830751	1.00[AFR][1000 genomes]
rs73830752	1.00[AFR][1000 genomes]
rs73830755	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46120800-46129400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr3:46123200-46129600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr3:46123400-46130400	Weak transcription	Adipose Nuclei	Adipose
4	chr3:46125800-46130600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:46126200-46132600	Weak transcription	Right Atrium	heart
6	chr3:46127200-46138200	Weak transcription	Primary T cells from cord blood	blood
7	chr3:46127400-46130600	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr3:46127600-46129000	Weak transcription	Fetal Thymus	thymus
9	chr3:46127600-46129400	Enhancers	Hela-S3	cervix
10	chr3:46127600-46130200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:46127600-46130200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:46127600-46130400	Weak transcription	HMEC	breast
13	chr3:46127600-46130400	Weak transcription	NHDF-Ad	bronchial
14	chr3:46127600-46130600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr3:46127800-46130400	Weak transcription	NHEK	skin
16	chr3:46127800-46130600	Weak transcription	Placenta	Placenta
17	chr3:46128000-46129200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr3:46128000-46130400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:46128200-46130200	Weak transcription	Spleen	Spleen
20	chr3:46128200-46130400	Weak transcription	Fetal Lung	lung
21	chr3:46128200-46130600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:46128200-46131000	Weak transcription	Esophagus	oesophagus
23	chr3:46128400-46130400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:46128400-46130400	Weak transcription	Colon Smooth Muscle	Colon
25	chr3:46128400-46130400	Weak transcription	HSMMtube	muscle
26	chr3:46128400-46130600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:46128600-46129000	Weak transcription	Stomach Smooth Muscle	stomach

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