Variant report

Variant	rs73833215
Chromosome Location	chr4:102034545-102034546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12639641	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12647627	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17030767	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73833216	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv879669	chr4:101989816-102040091	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv879670	chr4:101989816-102043610	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879671	chr4:101989816-102048076	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv879672	chr4:101989816-102058842	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv879673	chr4:102002123-102043610	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv879674	chr4:102002123-102048076	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
9	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
10	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
11	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
12	nsv879675	chr4:102009827-102043610	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101941200-102035600	Weak transcription	Fetal Intestine Small	intestine
2	chr4:101997800-102034600	Weak transcription	HepG2	liver
3	chr4:102024000-102035600	Weak transcription	HMEC	breast
4	chr4:102024800-102036200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:102025000-102036000	Weak transcription	Gastric	stomach
6	chr4:102025000-102036000	Weak transcription	NHEK	skin
7	chr4:102025000-102036200	Weak transcription	Pancreas	Pancrea
8	chr4:102025000-102036400	Weak transcription	NH-A	brain
9	chr4:102025000-102048200	Weak transcription	Left Ventricle	heart
10	chr4:102025200-102035600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:102025400-102035600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr4:102025400-102036400	Weak transcription	Right Atrium	heart
13	chr4:102025600-102036000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr4:102025600-102036000	Weak transcription	Fetal Lung	lung
15	chr4:102025600-102049200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr4:102025800-102035200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:102025800-102036000	Weak transcription	Colon Smooth Muscle	Colon
18	chr4:102025800-102036000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr4:102025800-102036000	Weak transcription	Small Intestine	intestine
20	chr4:102025800-102036200	Weak transcription	Adipose Nuclei	Adipose
21	chr4:102025800-102036200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr4:102025800-102036200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr4:102026000-102034800	Weak transcription	Brain Angular Gyrus	brain
24	chr4:102026000-102035600	Weak transcription	Brain Substantia Nigra	brain
25	chr4:102026000-102046400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr4:102026200-102035000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr4:102026200-102036000	Weak transcription	NHDF-Ad	bronchial
28	chr4:102026200-102036200	Weak transcription	Osteobl	bone
29	chr4:102026200-102068600	Weak transcription	Primary T cells from cord blood	blood
30	chr4:102026400-102046000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr4:102029400-102035600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr4:102029600-102034800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr4:102029600-102035000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr4:102029600-102036200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr4:102029600-102037400	Weak transcription	A549	lung
36	chr4:102029600-102046600	Weak transcription	Primary B cells from cord blood	blood
37	chr4:102029800-102046200	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr4:102030200-102036200	Weak transcription	HSMM	muscle
39	chr4:102030200-102046000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr4:102030200-102049200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr4:102030400-102049600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr4:102030800-102035800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr4:102032000-102034800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr4:102032600-102035200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr4:102032600-102046400	Weak transcription	Psoas Muscle	Psoas
46	chr4:102033200-102035600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr4:102033600-102035600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr4:102034200-102044400	Weak transcription	Primary B cells from peripheral blood	blood
49	chr4:102034400-102036000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr4:102034400-102036000	Enhancers	Brain Anterior Caudate	brain

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