Variant report

Variant	rs73833236
Chromosome Location	chr4:86675978-86675979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs2624017	1.00[AMR][1000 genomes]
rs55683461	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55808941	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55954286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57107916	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59598592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59862953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60488187	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60808482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60845185	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61177258	1.00[AMR][1000 genomes]
rs73833234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833238	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833240	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833241	1.00[AMR][1000 genomes]
rs73833243	1.00[AMR][1000 genomes]
rs73833244	1.00[AMR][1000 genomes]
rs73833245	1.00[AMR][1000 genomes]
rs73833246	1.00[AMR][1000 genomes]
rs73833405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833879	1.00[AMR][1000 genomes]
rs73833939	1.00[AMR][1000 genomes]
rs73833945	1.00[AMR][1000 genomes]
rs73833946	1.00[AMR][1000 genomes]
rs73835536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73835541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73835544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73835547	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73835549	1.00[AMR][1000 genomes]
rs7656891	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv526211	chr4:86666893-86677107	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv291712	chr4:86671670-86676799	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv461567	chr4:86673888-86677107	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv594756	chr4:86673888-86677107	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86663400-86699800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:86666000-86682400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr4:86667600-86678000	Weak transcription	Stomach Mucosa	stomach
4	chr4:86667800-86676400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr4:86667800-86676400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr4:86668000-86677800	Weak transcription	Right Atrium	heart
7	chr4:86670400-86683600	Weak transcription	HSMMtube	muscle
8	chr4:86670600-86680400	Weak transcription	HUVEC	blood vessel
9	chr4:86671600-86681800	Weak transcription	Fetal Muscle Leg	muscle
10	chr4:86673000-86679800	Weak transcription	Primary B cells from cord blood	blood
11	chr4:86673400-86680600	Weak transcription	NHDF-Ad	bronchial
12	chr4:86673400-86682400	Weak transcription	Spleen	Spleen
13	chr4:86673400-86683400	Weak transcription	HSMM	muscle
14	chr4:86673600-86677600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:86673600-86681800	Weak transcription	Right Ventricle	heart
16	chr4:86673600-86683800	Weak transcription	Left Ventricle	heart
17	chr4:86674000-86679000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr4:86674600-86676000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:86674800-86677600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr4:86674800-86685400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr4:86675000-86676400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:86675400-86676200	Enhancers	Colon Smooth Muscle	Colon
23	chr4:86675600-86676200	Enhancers	Fetal Heart	heart
24	chr4:86675600-86676600	Enhancers	Adipose Nuclei	Adipose
25	chr4:86675800-86676400	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr4:86675800-86676400	Weak transcription	Brain Anterior Caudate	brain
27	chr4:86675800-86676600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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