Variant report

Variant	rs73833241
Chromosome Location	chr4:86680859-86680860
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs2624017	1.00[AMR][1000 genomes]
rs55683461	1.00[AMR][1000 genomes]
rs55808941	1.00[AMR][1000 genomes]
rs55954286	1.00[AMR][1000 genomes]
rs57107916	1.00[AMR][1000 genomes]
rs59598592	1.00[AMR][1000 genomes]
rs59862953	1.00[AMR][1000 genomes]
rs60488187	1.00[AMR][1000 genomes]
rs60808482	1.00[AMR][1000 genomes]
rs60845185	1.00[AMR][1000 genomes]
rs61177258	1.00[AMR][1000 genomes]
rs73833234	1.00[AMR][1000 genomes]
rs73833236	1.00[AMR][1000 genomes]
rs73833238	1.00[AMR][1000 genomes]
rs73833240	1.00[AMR][1000 genomes]
rs73833243	1.00[AMR][1000 genomes]
rs73833244	1.00[AMR][1000 genomes]
rs73833245	1.00[AMR][1000 genomes]
rs73833246	1.00[AMR][1000 genomes]
rs73833405	1.00[AMR][1000 genomes]
rs73833407	1.00[AMR][1000 genomes]
rs73833879	1.00[AMR][1000 genomes]
rs73833939	1.00[AMR][1000 genomes]
rs73833945	1.00[AMR][1000 genomes]
rs73833946	1.00[AMR][1000 genomes]
rs73835536	1.00[AMR][1000 genomes]
rs73835541	1.00[AMR][1000 genomes]
rs73835544	1.00[AMR][1000 genomes]
rs73835547	1.00[AMR][1000 genomes]
rs73835549	1.00[AMR][1000 genomes]
rs7656891	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879517	chr4:86677107-86739805	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86663400-86699800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:86666000-86682400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr4:86670400-86683600	Weak transcription	HSMMtube	muscle
4	chr4:86671600-86681800	Weak transcription	Fetal Muscle Leg	muscle
5	chr4:86673400-86682400	Weak transcription	Spleen	Spleen
6	chr4:86673400-86683400	Weak transcription	HSMM	muscle
7	chr4:86673600-86681800	Weak transcription	Right Ventricle	heart
8	chr4:86673600-86683800	Weak transcription	Left Ventricle	heart
9	chr4:86674800-86685400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:86676200-86683000	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:86676400-86682800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:86676600-86681800	Weak transcription	Adipose Nuclei	Adipose
13	chr4:86676600-86681800	Weak transcription	Pancreas	Pancrea
14	chr4:86676600-86682800	Weak transcription	Brain Anterior Caudate	brain
15	chr4:86676800-86682200	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr4:86676800-86697800	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr4:86678200-86682800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:86678200-86685200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:86678400-86682800	Weak transcription	Right Atrium	heart
20	chr4:86679000-86684600	Strong transcription	Primary B cells from peripheral blood	blood
21	chr4:86679800-86681000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:86680000-86682000	Weak transcription	Fetal Brain Male	brain
23	chr4:86680400-86682400	Enhancers	Fetal Lung	lung
24	chr4:86680400-86682800	Enhancers	HUVEC	blood vessel
25	chr4:86680400-86683400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:86680400-86685600	Enhancers	Osteobl	bone
27	chr4:86680600-86681000	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr4:86680600-86681400	Strong transcription	Primary B cells from cord blood	blood
29	chr4:86680600-86681800	Enhancers	NHDF-Ad	bronchial
30	chr4:86680600-86682800	Enhancers	NHLF	lung
31	chr4:86680600-86683200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr4:86680600-86683200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr4:86680800-86681000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr4:86680800-86681000	Enhancers	Fetal Kidney	kidney
35	chr4:86680800-86681000	Enhancers	Fetal Stomach	stomach
36	chr4:86680800-86681600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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