Variant report

Variant	rs73833268
Chromosome Location	chr4:102120735-102120736
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:102112038..102115219-chr4:102118263..102121528,3	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10024318	1.00[EUR][1000 genomes]
rs28406782	1.00[EUR][1000 genomes]
rs28414287	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28532678	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28599683	1.00[EUR][1000 genomes]
rs28624713	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28678322	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55633921	1.00[EUR][1000 genomes]
rs6838341	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833253	1.00[EUR][1000 genomes]
rs73833255	1.00[EUR][1000 genomes]
rs73833261	1.00[EUR][1000 genomes]
rs73833264	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833265	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833269	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73833271	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7653943	1.00[EUR][1000 genomes]
rs7662565	1.00[EUR][1000 genomes]
rs7676124	1.00[EUR][1000 genomes]
rs9686022	1.00[EUR][1000 genomes]
rs9990724	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102105400-102126200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:102106200-102121600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:102107600-102126600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr4:102109200-102126200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr4:102109800-102122600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr4:102111200-102122400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr4:102113200-102121000	Weak transcription	HSMM	muscle
8	chr4:102113200-102122400	Weak transcription	Aorta	Aorta
9	chr4:102113200-102124400	Weak transcription	Pancreas	Pancrea
10	chr4:102113400-102120800	Weak transcription	NH-A	brain
11	chr4:102113600-102120800	Weak transcription	Right Ventricle	heart
12	chr4:102113600-102121400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:102113600-102122800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:102113800-102120800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr4:102113800-102121000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr4:102113800-102121000	Weak transcription	HMEC	breast
17	chr4:102113800-102122800	Weak transcription	Right Atrium	heart
18	chr4:102113800-102126200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr4:102113800-102127200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr4:102113800-102131800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr4:102114000-102121200	Weak transcription	Adipose Nuclei	Adipose
22	chr4:102114800-102121200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:102115400-102120800	Weak transcription	Osteobl	bone
24	chr4:102117000-102120800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr4:102117000-102121600	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr4:102117200-102121200	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr4:102117200-102121200	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr4:102117200-102125800	Weak transcription	Dnd41	blood
29	chr4:102117200-102126200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr4:102117400-102121200	Weak transcription	NHEK	skin
31	chr4:102117600-102121400	Enhancers	Fetal Intestine Small	intestine
32	chr4:102117600-102123000	Enhancers	HepG2	liver
33	chr4:102117800-102121800	Enhancers	Liver	Liver
34	chr4:102117800-102124200	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr4:102118000-102132600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr4:102118200-102121800	Enhancers	Colon Smooth Muscle	Colon
37	chr4:102118200-102126800	Weak transcription	Primary hematopoietic stem cells	blood
38	chr4:102118800-102126200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr4:102119200-102121600	Enhancers	Fetal Intestine Large	intestine
40	chr4:102119200-102122200	Enhancers	Brain Anterior Caudate	brain
41	chr4:102119400-102121400	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr4:102119400-102121800	Enhancers	Primary B cells from cord blood	blood
43	chr4:102119400-102122800	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr4:102119400-102123200	Enhancers	Primary B cells from peripheral blood	blood
45	chr4:102119400-102123200	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr4:102119400-102123200	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr4:102119400-102123200	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr4:102119600-102120800	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr4:102119600-102121600	Enhancers	Brain Hippocampus Middle	brain
50	chr4:102119600-102121600	Enhancers	Rectal Mucosa Donor 31	rectum

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