Variant report

Variant	rs73833879
Chromosome Location	chr4:86710318-86710319
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86709819..86711505-chr4:86721920..86724545,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs55683461	1.00[AMR][1000 genomes]
rs55808941	1.00[AMR][1000 genomes]
rs55954286	1.00[AMR][1000 genomes]
rs57107916	1.00[AMR][1000 genomes]
rs59598592	1.00[AMR][1000 genomes]
rs59862953	1.00[AMR][1000 genomes]
rs60488187	1.00[AMR][1000 genomes]
rs60808482	1.00[AMR][1000 genomes]
rs60845185	1.00[AMR][1000 genomes]
rs61177258	1.00[AMR][1000 genomes]
rs73833234	1.00[AMR][1000 genomes]
rs73833236	1.00[AMR][1000 genomes]
rs73833238	1.00[AMR][1000 genomes]
rs73833240	1.00[AMR][1000 genomes]
rs73833241	1.00[AMR][1000 genomes]
rs73833243	1.00[AMR][1000 genomes]
rs73833244	1.00[AMR][1000 genomes]
rs73833245	1.00[AMR][1000 genomes]
rs73833246	1.00[AMR][1000 genomes]
rs73833405	1.00[AMR][1000 genomes]
rs73833407	1.00[AMR][1000 genomes]
rs73833939	1.00[AMR][1000 genomes]
rs73833945	1.00[AMR][1000 genomes]
rs73833946	1.00[AMR][1000 genomes]
rs73835536	1.00[AMR][1000 genomes]
rs73835541	1.00[AMR][1000 genomes]
rs73835544	1.00[AMR][1000 genomes]
rs73835547	1.00[AMR][1000 genomes]
rs73835549	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879517	chr4:86677107-86739805	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86701000-86728800	Weak transcription	Right Ventricle	heart
2	chr4:86701200-86715600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:86702200-86711200	Weak transcription	Fetal Lung	lung
4	chr4:86704000-86715600	Enhancers	Osteobl	bone
5	chr4:86704000-86719800	Enhancers	NHDF-Ad	bronchial
6	chr4:86705000-86712600	Weak transcription	Primary B cells from cord blood	blood
7	chr4:86705400-86711200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr4:86705800-86710800	Weak transcription	Fetal Stomach	stomach
9	chr4:86705800-86719600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:86706400-86712800	Enhancers	HUVEC	blood vessel
11	chr4:86706600-86711800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr4:86708400-86718200	Weak transcription	Aorta	Aorta
13	chr4:86708800-86710400	Enhancers	Fetal Muscle Leg	muscle
14	chr4:86709000-86711600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:86709000-86714400	Weak transcription	NH-A	brain
16	chr4:86709000-86727000	Weak transcription	HSMMtube	muscle
17	chr4:86709200-86727000	Weak transcription	HSMM	muscle
18	chr4:86709400-86710800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:86709400-86711600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:86709400-86712600	Weak transcription	Primary B cells from peripheral blood	blood
21	chr4:86709400-86712600	Weak transcription	Left Ventricle	heart
22	chr4:86709400-86712600	Weak transcription	Right Atrium	heart
23	chr4:86709400-86712600	Weak transcription	Spleen	Spleen
24	chr4:86709400-86713600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr4:86709800-86710400	Enhancers	Fetal Intestine Small	intestine
26	chr4:86709800-86711000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:86709800-86714000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr4:86710000-86710400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr4:86710000-86711000	Enhancers	Rectal Smooth Muscle	rectum
30	chr4:86710000-86711800	Weak transcription	NHLF	lung
31	chr4:86710000-86712600	Enhancers	Colon Smooth Muscle	Colon
32	chr4:86710200-86710400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:86710200-86710600	Weak transcription	Adipose Nuclei	Adipose
34	chr4:86710200-86712600	Weak transcription	Fetal Kidney	kidney
35	chr4:86710200-86712800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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