Variant report

Variant	rs73835539
Chromosome Location	chr4:86636702-86636703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17010705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59030113	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59325380	1.00[AMR][1000 genomes]
rs6816135	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73835542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73835543	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86625400-86638200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:86629800-86638000	Weak transcription	Fetal Lung	lung
3	chr4:86629800-86638000	Weak transcription	HSMMtube	muscle
4	chr4:86632000-86647000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:86633600-86644800	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:86634200-86636800	Enhancers	Primary B cells from cord blood	blood
7	chr4:86636200-86637600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr4:86636200-86637600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr4:86636200-86639800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:86636400-86637400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr4:86636600-86637200	Enhancers	HSMM	muscle
12	chr4:86636600-86638000	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr4:86636600-86638800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:86636600-86639200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:86636600-86643600	Enhancers	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links