Variant report

Variant	rs73838344
Chromosome Location	chr4:87740144-87740145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13435377	1.00[AMR][1000 genomes]
rs28585548	1.00[AMR][1000 genomes]
rs28702596	1.00[AMR][1000 genomes]
rs55644945	1.00[AMR][1000 genomes]
rs58252316	1.00[AMR][1000 genomes]
rs60111562	1.00[AMR][1000 genomes]
rs60354679	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6853105	1.00[AMR][1000 genomes]
rs73837055	1.00[AMR][1000 genomes]
rs73837061	1.00[AMR][1000 genomes]
rs73837062	1.00[AMR][1000 genomes]
rs73837570	1.00[AMR][1000 genomes]
rs73837572	1.00[AMR][1000 genomes]
rs73837573	1.00[AMR][1000 genomes]
rs73838352	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830001	chr4:87585278-87748643	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87712600-87751400	Weak transcription	Aorta	Aorta
2	chr4:87731200-87756000	Weak transcription	Pancreas	Pancrea
3	chr4:87732400-87760000	Weak transcription	Psoas Muscle	Psoas
4	chr4:87735600-87740400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:87737200-87741000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr4:87737400-87741200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:87737400-87743600	Weak transcription	Brain Anterior Caudate	brain
8	chr4:87737400-87744200	Weak transcription	Left Ventricle	heart
9	chr4:87737600-87740200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr4:87737600-87740600	Enhancers	Fetal Lung	lung
11	chr4:87737600-87742200	Weak transcription	Fetal Kidney	kidney
12	chr4:87737600-87744600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:87737600-87746600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:87737600-87752600	Weak transcription	Esophagus	oesophagus
15	chr4:87737800-87741000	Enhancers	Fetal Intestine Large	intestine
16	chr4:87737800-87754800	Weak transcription	Brain Hippocampus Middle	brain
17	chr4:87738000-87741200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr4:87738000-87743000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr4:87738200-87740600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:87738200-87746800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:87738200-87752000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr4:87738400-87743200	Weak transcription	Adipose Nuclei	Adipose
23	chr4:87738400-87744600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr4:87738400-87744800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:87738400-87746400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr4:87738600-87741000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:87738600-87743400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:87739000-87740200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr4:87739600-87740400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr4:87739600-87740400	Enhancers	Fetal Intestine Small	intestine
31	chr4:87739600-87743200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr4:87739800-87743200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr4:87739800-87757600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr4:87740000-87740400	Enhancers	HepG2	liver
35	chr4:87740000-87740400	Strong transcription	NHEK	skin

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