Variant report

Variant	rs73838352
Chromosome Location	chr4:87766359-87766360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13435377	1.00[AMR][1000 genomes]
rs28585548	1.00[AMR][1000 genomes]
rs28702596	1.00[AMR][1000 genomes]
rs55644945	1.00[AMR][1000 genomes]
rs58252316	1.00[AMR][1000 genomes]
rs60111562	1.00[AMR][1000 genomes]
rs60354679	1.00[AMR][1000 genomes]
rs6853105	1.00[AMR][1000 genomes]
rs73837055	1.00[AMR][1000 genomes]
rs73837061	1.00[AMR][1000 genomes]
rs73837062	1.00[AMR][1000 genomes]
rs73837570	1.00[AMR][1000 genomes]
rs73837572	1.00[AMR][1000 genomes]
rs73837573	1.00[AMR][1000 genomes]
rs73838344	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87743200-87769400	Weak transcription	Right Ventricle	heart
2	chr4:87753000-87766800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:87757200-87769200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:87759000-87768200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:87760600-87767600	Enhancers	HMEC	breast
6	chr4:87762600-87768200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:87762800-87768200	Weak transcription	NHDF-Ad	bronchial
8	chr4:87763600-87769400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:87764800-87766800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:87764800-87766800	Weak transcription	Adipose Nuclei	Adipose
11	chr4:87765000-87768000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:87765600-87768200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:87766200-87767200	Transcr. at gene 5' and 3'	NHEK	skin
14	chr4:87766200-87768200	Enhancers	HUVEC	blood vessel
15	chr4:87766200-87768400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:87766200-87768800	Weak transcription	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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