Variant report

Variant	rs73839171
Chromosome Location	chr4:88210903-88210904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:88141337..88143545-chr4:88209433..88211061,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145332	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1037813	1.00[ASN][1000 genomes]
rs11945520	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13103234	1.00[ASN][1000 genomes]
rs13108043	1.00[ASN][1000 genomes]
rs13134084	1.00[ASN][1000 genomes]
rs13149842	0.92[AFR][1000 genomes]
rs17030453	1.00[ASN][1000 genomes]
rs17668731	1.00[ASN][1000 genomes]
rs17668952	1.00[ASN][1000 genomes]
rs17703261	1.00[ASN][1000 genomes]
rs35658582	1.00[ASN][1000 genomes]
rs4079	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4305486	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4505787	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57455613	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57954253	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58336541	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59054114	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59395199	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59526367	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62306540	1.00[ASN][1000 genomes]
rs6531974	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817981	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6822384	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6829145	1.00[ASN][1000 genomes]
rs6834947	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846149	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846352	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6850337	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71607404	1.00[ASN][1000 genomes]
rs72875519	1.00[ASN][1000 genomes]
rs7662471	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664479	1.00[ASN][1000 genomes]
rs7668285	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676494	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686034	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997750	chr4:87933945-88264127	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1007020	chr4:88046263-88235018	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537169	chr4:88046263-88235018	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv516203	chr4:88167878-88228228	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv870296	chr4:88173534-88295927	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv470050	chr4:88186509-88228228	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1014215	chr4:88192854-88225673	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
8	nsv537172	chr4:88192854-88225673	Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1005615	chr4:88194170-88224906	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
10	esv2760913	chr4:88194170-88228412	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
11	nsv879527	chr4:88194170-88250203	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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