Variant report

Variant	rs73840164
Chromosome Location	chr3:53676087-53676088
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1401492	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3774492	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3774508	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3774519	0.91[EUR][1000 genomes]
rs3774522	0.85[ASN][1000 genomes]
rs3774529	0.91[EUR][1000 genomes]
rs3774538	0.91[EUR][1000 genomes]
rs6784608	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6792713	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6802110	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6802129	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9871578	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1001128	chr3:53659570-53927842	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	esv3449699	chr3:53673112-53677010	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53652800-53684000	Weak transcription	Right Atrium	heart
2	chr3:53666400-53681400	Weak transcription	Fetal Lung	lung
3	chr3:53667600-53680600	Weak transcription	Fetal Intestine Large	intestine
4	chr3:53670600-53676400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:53674800-53678000	Strong transcription	Fetal Intestine Small	intestine
6	chr3:53675200-53677600	Weak transcription	Esophagus	oesophagus
7	chr3:53676000-53677200	Enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links