Variant report

Variant	rs73843249
Chromosome Location	chr3:85029147-85029148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17022263	1.00[AMR][1000 genomes]
rs41425244	1.00[AMR][1000 genomes]
rs56152547	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56328407	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60728740	1.00[AMR][1000 genomes]
rs6770335	1.00[EUR][1000 genomes]
rs73843248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73843250	1.00[AMR][1000 genomes]
rs73843251	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73843255	1.00[AMR][1000 genomes]
rs73843257	1.00[AMR][1000 genomes]
rs73843259	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73843260	1.00[AMR][1000 genomes]
rs73843263	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73845111	1.00[AMR][1000 genomes]
rs73845113	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381298	chr3:84689266-85030314	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1001316	chr3:84773522-85071342	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv877091	chr3:84876250-85069287	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv482371	chr3:84880813-85031486	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv471620	chr3:84880814-85031486	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv1829788	chr3:84926769-85086403	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1010140	chr3:84997012-85034281	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1000793	chr3:85020452-85051839	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85018200-85029200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:85018400-85029200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:85019600-85029200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:85019800-85029200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:85020000-85030400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:85020000-85030600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:85020200-85032200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:85027600-85030800	Enhancers	Brain Substantia Nigra	brain
9	chr3:85027800-85030000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr3:85028400-85029200	Weak transcription	Fetal Lung	lung
11	chr3:85028400-85033800	Weak transcription	Brain Germinal Matrix	brain
12	chr3:85028600-85030800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:85028800-85029200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr3:85029000-85029200	Enhancers	Brain Cingulate Gyrus	brain
15	chr3:85029000-85029200	Enhancers	Brain Hippocampus Middle	brain
16	chr3:85029000-85029400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:85029000-85029400	Flanking Active TSS	Brain Angular Gyrus	brain
18	chr3:85029000-85029600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:85029000-85029600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr3:85029000-85029800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr3:85029000-85029800	Flanking Active TSS	Brain Anterior Caudate	brain

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