Variant report

Variant	rs73844129
Chromosome Location	chr3:82227833-82227834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55744263	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56075522	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56176695	1.00[AMR][1000 genomes]
rs57866040	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59610871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841708	1.00[AMR][1000 genomes]
rs73841709	1.00[AMR][1000 genomes]
rs73841723	1.00[AMR][1000 genomes]
rs73841729	1.00[AMR][1000 genomes]
rs73841730	1.00[AMR][1000 genomes]
rs73841749	1.00[AMR][1000 genomes]
rs73841752	1.00[AMR][1000 genomes]
rs73844134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73844137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73844140	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73844141	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73844143	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73844144	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7638801	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv877041	chr3:82074024-82363196	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1005262	chr3:82165228-82258781	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv877043	chr3:82198467-82311711	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv877044	chr3:82214617-82266033	Enhancers Weak transcription ZNF genes & repeats	lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82226400-82228000	Enhancers	Ovary	ovary
2	chr3:82227800-82228000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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