Variant report

Variant	rs73849807
Chromosome Location	chr4:142012657-142012658
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17006853	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57049422	1.00[AMR][1000 genomes]
rs6857217	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849808	1.00[AMR][1000 genomes]
rs73849845	1.00[AMR][1000 genomes]
rs73851909	1.00[AMR][1000 genomes]
rs73851910	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv880169	chr4:142005573-142038481	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141999200-142014000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:142000800-142031600	Weak transcription	Right Ventricle	heart
3	chr4:142001000-142014200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:142003600-142015600	Weak transcription	Fetal Stomach	stomach
5	chr4:142003600-142021000	Weak transcription	Fetal Kidney	kidney
6	chr4:142005000-142017800	Weak transcription	Colon Smooth Muscle	Colon
7	chr4:142009600-142013000	Enhancers	Fetal Heart	heart
8	chr4:142010400-142013000	Enhancers	Psoas Muscle	Psoas
9	chr4:142010400-142027600	Weak transcription	Left Ventricle	heart
10	chr4:142011000-142013000	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr4:142011600-142013200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr4:142012000-142012800	Enhancers	Fetal Muscle Leg	muscle
13	chr4:142012600-142013000	Enhancers	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links