Variant report

Variant	rs73849845
Chromosome Location	chr4:142058571-142058572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17006853	1.00[AMR][1000 genomes]
rs17006913	0.87[AFR][1000 genomes]
rs17006916	0.83[AFR][1000 genomes]
rs56044111	0.87[AFR][1000 genomes]
rs57049422	1.00[AMR][1000 genomes]
rs57425272	0.87[AFR][1000 genomes]
rs57567945	0.83[AFR][1000 genomes]
rs6857217	1.00[AMR][1000 genomes]
rs73849807	1.00[AMR][1000 genomes]
rs73849808	1.00[AMR][1000 genomes]
rs73849810	0.87[AFR][1000 genomes]
rs73849811	0.87[AFR][1000 genomes]
rs73849812	0.87[AFR][1000 genomes]
rs73849843	0.83[AFR][1000 genomes]
rs73849846	0.87[AFR][1000 genomes]
rs73849847	0.83[AFR][1000 genomes]
rs73851909	1.00[AMR][1000 genomes]
rs73851910	1.00[AMR][1000 genomes]
rs7669598	0.87[AFR][1000 genomes]
rs7672823	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv880170	chr4:142046828-142137165	Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv526770	chr4:142048547-142061946	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142056000-142062000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr4:142056400-142061800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:142056600-142061200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:142056600-142061800	Weak transcription	Fetal Stomach	stomach
5	chr4:142056600-142063600	Weak transcription	Left Ventricle	heart
6	chr4:142056800-142060000	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:142056800-142061200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:142056800-142062000	Weak transcription	Fetal Heart	heart
9	chr4:142057200-142061400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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