Variant report

Variant	rs73850509
Chromosome Location	chr4:143498619-143498620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10002341	0.88[AFR][1000 genomes]
rs10028095	1.00[AMR][1000 genomes]
rs10519662	0.81[AFR][1000 genomes]
rs13435036	0.91[AFR][1000 genomes]
rs1373037	0.88[AFR][1000 genomes]
rs1425526	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17016338	1.00[AMR][1000 genomes]
rs17016533	0.91[AFR][1000 genomes]
rs28497887	0.88[AFR][1000 genomes]
rs7667002	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143489600-143505600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr4:143489800-143500400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:143489800-143519400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:143490600-143504600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr4:143490800-143519200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr4:143492400-143506200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:143493600-143500600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr4:143493600-143510800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:143494000-143500600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr4:143494600-143501200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr4:143496000-143503600	Weak transcription	Fetal Heart	heart
12	chr4:143496200-143501000	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr4:143496200-143505600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr4:143496400-143501400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr4:143497400-143499000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr4:143498400-143499400	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr4:143498600-143499200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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