Variant report

Variant	rs73850524
Chromosome Location	chr4:143567252-143567253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143552083..143553625-chr4:143567015..143569107,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1425532	1.00[AMR][1000 genomes]
rs28675992	1.00[AMR][1000 genomes]
rs55920161	1.00[AMR][1000 genomes]
rs55947218	1.00[AMR][1000 genomes]
rs56116507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56330901	1.00[AMR][1000 genomes]
rs57206134	1.00[AMR][1000 genomes]
rs57770652	1.00[AMR][1000 genomes]
rs58269423	1.00[AMR][1000 genomes]
rs73850512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850521	1.00[AMR][1000 genomes]
rs73850528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850569	1.00[AMR][1000 genomes]
rs73850572	1.00[AMR][1000 genomes]
rs73850573	1.00[AMR][1000 genomes]
rs73850574	1.00[AMR][1000 genomes]
rs73850575	1.00[AMR][1000 genomes]
rs73850577	1.00[AMR][1000 genomes]
rs73850580	1.00[AMR][1000 genomes]
rs73850581	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143537000-143575800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143559200-143568600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:143564800-143569400	Weak transcription	Aorta	Aorta
4	chr4:143565000-143568200	Enhancers	Dnd41	blood
5	chr4:143565400-143567600	Enhancers	Fetal Thymus	thymus
6	chr4:143565600-143568400	Enhancers	Primary T cells from cord blood	blood
7	chr4:143566400-143567400	Enhancers	HUVEC	blood vessel
8	chr4:143566400-143567600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:143566400-143568000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr4:143566400-143568000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr4:143566400-143568000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr4:143566400-143568000	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr4:143566400-143568400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr4:143566600-143567400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
15	chr4:143566800-143569600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:143567000-143567400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr4:143567000-143568800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
18	chr4:143567200-143567800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr4:143567200-143567800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:143567200-143568000	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr4:143567200-143568000	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr4:143567200-143568000	Enhancers	Fetal Heart	heart
23	chr4:143567200-143568600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:143567200-143568600	Weak transcription	Thymus	Thymus

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