Variant report

Variant	rs73850569
Chromosome Location	chr4:143743628-143743629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs55675363	1.00[AMR][1000 genomes]
rs55920161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55947218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56116507	1.00[AMR][1000 genomes]
rs56330901	1.00[AMR][1000 genomes]
rs57206134	1.00[AMR][1000 genomes]
rs57434180	0.84[AFR][1000 genomes]
rs57770652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58070744	1.00[AMR][1000 genomes]
rs58269423	1.00[AMR][1000 genomes]
rs58306079	1.00[AMR][1000 genomes]
rs58701532	1.00[AMR][1000 genomes]
rs60285299	1.00[AMR][1000 genomes]
rs60387330	1.00[AMR][1000 genomes]
rs61538113	1.00[AMR][1000 genomes]
rs61741556	1.00[AMR][1000 genomes]
rs73850521	1.00[AMR][1000 genomes]
rs73850524	1.00[AMR][1000 genomes]
rs73850528	1.00[AMR][1000 genomes]
rs73850572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850573	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850581	1.00[AMR][1000 genomes]
rs73850587	1.00[AMR][1000 genomes]
rs73850588	1.00[AMR][1000 genomes]
rs73850592	1.00[AMR][1000 genomes]
rs73850620	1.00[AMR][1000 genomes]
rs73850621	1.00[AMR][1000 genomes]
rs73850622	1.00[AMR][1000 genomes]
rs73850641	1.00[AMR][1000 genomes]
rs73853610	1.00[AMR][1000 genomes]
rs7654096	1.00[AMR][1000 genomes]
rs7668584	1.00[AMR][1000 genomes]
rs7690525	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143732000-143744600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr4:143732600-143745000	Weak transcription	Left Ventricle	heart
3	chr4:143732600-143749600	Weak transcription	Right Ventricle	heart
4	chr4:143740200-143765800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:143740600-143745200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:143740800-143745400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:143741200-143746600	Weak transcription	Fetal Heart	heart
8	chr4:143741200-143751800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:143742800-143745400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:143743200-143744000	Strong transcription	Primary hematopoietic stem cells	blood
11	chr4:143743200-143744200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr4:143743600-143745400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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