Variant report
| Variant | rs73850588 |
|---|---|
| Chromosome Location | chr4:143795190-143795191 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:143795116..143796880-chr4:143868819..143870461,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs55675363 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55920161 | 1.00[AMR][1000 genomes] |
| rs55947218 | 1.00[AMR][1000 genomes] |
| rs56330901 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57206134 | 1.00[AMR][1000 genomes] |
| rs57770652 | 1.00[AMR][1000 genomes] |
| rs58070744 | 1.00[AMR][1000 genomes] |
| rs58269423 | 1.00[AMR][1000 genomes] |
| rs58306079 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58701532 | 1.00[AMR][1000 genomes] |
| rs60285299 | 1.00[AMR][1000 genomes] |
| rs60387330 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61538113 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61741556 | 1.00[AMR][1000 genomes] |
| rs73850528 | 1.00[AMR][1000 genomes] |
| rs73850569 | 1.00[AMR][1000 genomes] |
| rs73850572 | 1.00[AMR][1000 genomes] |
| rs73850573 | 1.00[AMR][1000 genomes] |
| rs73850574 | 1.00[AMR][1000 genomes] |
| rs73850575 | 1.00[AMR][1000 genomes] |
| rs73850577 | 1.00[AMR][1000 genomes] |
| rs73850580 | 1.00[AMR][1000 genomes] |
| rs73850581 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73850587 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73850592 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73850620 | 1.00[AMR][1000 genomes] |
| rs73850621 | 1.00[AMR][1000 genomes] |
| rs73850622 | 1.00[AMR][1000 genomes] |
| rs73850641 | 1.00[AMR][1000 genomes] |
| rs73850662 | 1.00[AMR][1000 genomes] |
| rs73853610 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7654096 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7668584 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7690525 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv880174 | chr4:143639498-143848024 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv880175 | chr4:143779613-143892252 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1033772 | chr4:143788043-143800961 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 4 | nsv1019095 | chr4:143788043-143801270 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 5 | nsv1021242 | chr4:143788460-143801084 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 6 | nsv437434 | chr4:143788564-143801347 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 7 | esv2760829 | chr4:143793939-143801096 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 8 | esv2422175 | chr4:143794072-143800973 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 9 | esv3467402 | chr4:143794085-143801152 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 10 | nsv10580 | chr4:143794158-143856359 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 11 | esv3467403 | chr4:143794229-143801010 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 12 | esv18685 | chr4:143794391-143800941 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:143795000-143796600 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
